Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,814,098 – 10,814,191 |
Length | 93 |
Max. P | 0.523001 |
Location | 10,814,098 – 10,814,191 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 90.50 |
Mean single sequence MFE | -23.46 |
Consensus MFE | -17.03 |
Energy contribution | -17.09 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.17 |
Mean z-score | -1.65 |
Structure conservation index | 0.73 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523001 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10814098 93 - 22407834 GCAGCCGGCGCAGAGUCAAGAAAGCAAUGGCAUCCCAAAGGAAAAUAAGAAAUGGAAGCCAGGCAUGCUGAAGUUUCAACUAGGGAAUACCCU (((((((((.....)))..........((((.(((..................))).))))))).))).............((((....)))) ( -23.17) >DroSec_CAF1 47664 93 - 1 GCAGCCGGCGCAGAGCCAAGAAAACAAUGGCAUCCCAAAGGAAAAUAAGAAAUGGAAGCCAGGCAUGCUGAAGUUUCAACUAGGGAAUACCCU (((((((((.....)))..........((((.(((..................))).))))))).))).............((((....)))) ( -25.87) >DroEre_CAF1 48609 93 - 1 GCAGCCGGCGCAGAGCCAAGAAAACAAUGGCAUCCCCAAGGAAAAUAAUAAAUGGGAAUCACGCGUGCUGAAGCUCGAACUAGGGAAUACCCU .((((..((((...((((.........))))...((((..............))))......))))))))...........((((....)))) ( -23.34) >DroYak_CAF1 49771 93 - 1 CCAGCCGGCGCAGAGCCAAGAAAACAAUGGCAUCCCAAAGGAAAAUAAGAAAUGGGAAUCCUCCAUGCUGAAGCUCGAACUAGGGAAUACCCU .((((.(((.....))).........((((..(((((...............))))).....))))))))...........((((....)))) ( -21.46) >consensus GCAGCCGGCGCAGAGCCAAGAAAACAAUGGCAUCCCAAAGGAAAAUAAGAAAUGGAAACCAGGCAUGCUGAAGCUCCAACUAGGGAAUACCCU .((((.(((.....)))..........((((.(((..................))).)))).....))))...........((((....)))) (-17.03 = -17.09 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:12 2006