Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,162,116 – 1,162,210 |
Length | 94 |
Max. P | 0.500000 |
Location | 1,162,116 – 1,162,210 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.72 |
Mean single sequence MFE | -36.86 |
Consensus MFE | -19.84 |
Energy contribution | -21.64 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.81 |
Structure conservation index | 0.54 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1162116 94 + 22407834 GACUGGAUAGUUCCGCGCAGCUCCUCGUUGCUGGAAAGGGUA--------------------GGGGGUUAGGGUUAGUGGCUUAAAAUUAGCCUCGCUGCGGACCAUUAAUCAU------ ...(((.((((((((((((((((((..((.((....))))..--------------------))))))).((((((((........)))))))).)).)))))..)))).))).------ ( -30.30) >DroSec_CAF1 55612 114 + 1 GACUGAAUCGUUCCGCGCAGCUCCUCGUUGCUGCAAAGGGCAAUGGUGGUGAGGGGGGCUGAGGGGGUUAGGGUUAGUGGCUUAAAAUUAGCCUCGCUGCGGACCAUUAAUCAU------ .........(.(((((.(((((((((.(..(..(...........)..)..))))))))))((((((((((..((((....))))..)))))))).))))))).).........------ ( -41.60) >DroSim_CAF1 50710 106 + 1 GACUGGAUCGUUCCGCGCAGCUCCUCGUUGCUGCAAAGGGCAAUGGUGGUGGGGA--------GGGGUUAGGGUUAGUGGCUUAAAAUUAGCCUCGCUGCGGACCAUUAAUCAU------ ((...(((.((.((((((((((((((.(..(..(...........)..)..).))--------)))))).((((((((........)))))))).)).)))))).)))..))..------ ( -38.70) >DroEre_CAF1 49534 99 + 1 GACUGUAUGGUUCCGCUCAGCAUAUCGUUGCUGCAAAGGAGU--------------------GGGGUUUAGGG-AAGUGCCUUAAAAUUAGCCUCGCUCCGGACCAUUAAUCAUCGGAUC ((.((.(((((((....(((((......)))))....(((((--------------------(((((((((((-.....)))))).....))))))))))))))))))).))........ ( -36.70) >DroYak_CAF1 50911 94 + 1 GACUGGAUGGUUCCGCGCAGCUCCUCGUUGCUGCAAAGGAGU--------------------GGGGGUUAGGG-AAGUGGCUUAAAAUUAGCCUCGCUCCGGACCAUUAAUCAUA----- ((...((((((((...(((((........)))))...(((((--------------------((((.((((..-(((...)))....)))))))))))))))))))))..))...----- ( -37.00) >consensus GACUGGAUCGUUCCGCGCAGCUCCUCGUUGCUGCAAAGGGCA____________________GGGGGUUAGGGUUAGUGGCUUAAAAUUAGCCUCGCUGCGGACCAUUAAUCAU______ .........(.((((((((((........))))).............................((((((((..((((....))))..))))))))...))))).)............... (-19.84 = -21.64 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:10 2006