| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,809,552 – 10,809,647 |
| Length | 95 |
| Max. P | 0.644288 |
| Location | 10,809,552 – 10,809,647 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 76.54 |
| Mean single sequence MFE | -24.30 |
| Consensus MFE | -11.41 |
| Energy contribution | -11.78 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.644288 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10809552 95 + 22407834 U-CCUGGCCACACACACACUGCGUAUACGUAAU---GUUCGCAGUGCAUCCC-CGCAUCAUCAUAAAUUUGCAAAGUUGCCUAAAAGCUGGCAGUGCCAU .-..((((.((.....(((((((.(((.....)---)).)))))))......-.(((............))).....((((........)))))))))). ( -25.00) >DroSec_CAF1 43311 91 + 1 A-CCUGGC---GCACACACUGCGUAUACGUAAU---AUUCGCAGUGCAG-CC-CGCAGCAUCAUAAAUUUGCCAAGUUGCCUAAAAGCUGGCUGUGCCAU .-..((((---((...(((((((.(((.....)---)).))))))).((-((-.((.(((.........)))..((....))....)).)))))))))). ( -29.80) >DroSim_CAF1 48676 91 + 1 A-CCUGGC---GCACACACUGCGUAUACGUAAU---AUUCGCAGUGCAC-CC-CGCAGCAUCAUAAAUUUGCCAAGUUGCCUAAAAGCUGGCUGUGCCAU .-..((((---(((..(((((((.(((.....)---)).)))))))...-..-.................((((.(((.......)))))))))))))). ( -28.40) >DroEre_CAF1 44159 89 + 1 UAACAG-----GAACACACUGCGUAUACGCAAU---GUUCGCAGUGCAG-CC-CGCAGCAUCAUAAAU-UGCCAAGUUGCCUAAAAGCUGGCAGUGCCGU ......-----(((((...((((....)))).)---))))(((.(((((-(.-.(((((..((.....-))....)))))......))).))).)))... ( -24.60) >DroYak_CAF1 44507 90 + 1 UGCCUG-----GCACACACUGCGUAUGCGUAAU---GCUCGCAGUGCAC-CC-CGCAGCAUCAUAAAUUUGCCAAGUUGCCUAAAAGCUGGCAAUGCCAU ....((-----(((..(((((((...((.....---)).)))))))...-..-...............((((((.(((.......)))))))))))))). ( -28.60) >DroAna_CAF1 43641 89 + 1 UU----------AAAAAACUCCCCAUUUAUAAGCCCCUUUGCAGUGUAC-UUUUUUCGUAUCAUAAAUUUUUCGAGCUGCCUAAAUGUUUGUACUACCAU ..----------...............(((((((......(((((((((-.......))))..............)))))......)))))))....... ( -9.43) >consensus U_CCUG_____GCACACACUGCGUAUACGUAAU___GUUCGCAGUGCAC_CC_CGCAGCAUCAUAAAUUUGCCAAGUUGCCUAAAAGCUGGCAGUGCCAU ................(((((((................)))))))........(((((................)))))........((((...)))). (-11.41 = -11.78 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:08 2006