| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,805,940 – 10,806,033 |
| Length | 93 |
| Max. P | 0.827375 |
| Location | 10,805,940 – 10,806,033 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 73.07 |
| Mean single sequence MFE | -26.08 |
| Consensus MFE | -15.95 |
| Energy contribution | -17.07 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.827375 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10805940 93 - 22407834 CCUAGACCGAGUUUUUCUCGCUCUGUCCAGGGAGCAGGCCAUUCCGAAGGUAAGUU----UAGGUGGUAAGCCAUA--AAA-CUUUGUGUUUGUUUGUGU (((.(((.((((.......)))).))).)))((((((((((...(....).(((((----(..((((....)))).--)))-))))).)))))))).... ( -25.50) >DroPse_CAF1 40653 83 - 1 ACUGGAUCGUGUUUUCCUGGCUCUCUCCAGGGAGCCGACCAUCCCCAAGGUGAGCUU---UGUG-CGGAAGCAAUUUUAAA-CUUUAU------------ ..(((.(((.((((.(((((......)))))))))))))))....(((((....)))---))((-(....)))........-......------------ ( -25.10) >DroSec_CAF1 39475 95 - 1 CCUGGAUCGAGUUUUUCUUGCUCUGUCCAGGGAGCAGGCCAUUCCUAAGGUAGGUUUUUUUGGGUGGUUAGCAAUA--UAA-CUUUGU--CAAUCACAAA (((((((.((((.......)))).)))))))((((..(((........)))..))))......((((((..(((..--...-..))).--.))))))... ( -31.80) >DroSim_CAF1 44677 91 - 1 CCUGGAUCGAGUUUUUCUCGCUCUGUCCAGGGAGCAGGCCAUUCCUAAGGUAGGUU----UGGGUGGUAAGCCAUA--AAA-CUUUGU--CUAUUACAAA (((((((.((((.......)))).)))))))..((((((((..((((...))))..----)))((((....)))).--...-.)))))--.......... ( -28.50) >DroYak_CAF1 40622 82 - 1 CCUGGACCGAGUUUUUCUCGCUCUGUCCCGGGAGCAGGCCAUUCCGAAGGUAGGUUU---UAUGGAGUUAGCAAUC--AAAACUUUG------------- ((.((((.((((.......)))).)))).))((((..(((........)))..))))---...((((((.......--..)))))).------------- ( -20.50) >DroPer_CAF1 40331 83 - 1 ACUGGAUCGUGUUUUCCUGGCUCUCUCCAGGGAGCCGACCAUCCCCAAGGUGAGCUU---UGUG-CGGAAGCAAUUUUAAA-CUUUAU------------ ..(((.(((.((((.(((((......)))))))))))))))....(((((....)))---))((-(....)))........-......------------ ( -25.10) >consensus CCUGGAUCGAGUUUUUCUCGCUCUGUCCAGGGAGCAGGCCAUUCCCAAGGUAAGUUU___UGGGUGGUAAGCAAUA__AAA_CUUUGU____________ (((((((.((((.......)))).)))))))((((..(((........)))..))))........................................... (-15.95 = -17.07 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:06 2006