| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,804,783 – 10,804,901 |
| Length | 118 |
| Max. P | 0.778434 |
| Location | 10,804,783 – 10,804,901 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.81 |
| Mean single sequence MFE | -32.30 |
| Consensus MFE | -20.00 |
| Energy contribution | -20.20 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.778434 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10804783 118 - 22407834 GACAGGAAGUGCAUUGCCGGCAAAGAGCAGAAAAGCGAGGCGGAAGUUGAGACAUUUUUGCUAACACUGCGGGUAAGUAUCCUUAG-CGGUAUAA-CGUUGAGCUUUGCAGGCAUAAAUA ........((((.(((((.(((...((((((((.((..(((....)))..).).)))))))).....))).)))))(((..(((((-((......-)))))))...)))..))))..... ( -38.50) >DroVir_CAF1 50968 117 - 1 GACAGGAAAUGUAUUGCCGGCAAGGAGCAGAAGACCGAGGCGGAAGUUGAGACAUUUUUGCUCACAUUGCGCGUAAGUAUCCUCUAACUAAACCA-ACUUAAACUGC--GCGCAUAAAUA .......(((((.(((....))).(((((((((..(..(((....)))..)...))))))))))))))(((((((.((.................-......)))))--))))....... ( -28.20) >DroGri_CAF1 49435 117 - 1 CACAGGAAAUGCAUAGCUGGCAAGGAGCAGAAAACAGAGGCGGAAGUUGAGACAUUUUUGCUCACAUUGCGCGUAAGUAUCCUUAAACUAAACCA-ACUUAAACGGC--CCGUAUAAAUA ........((((...((((((((.(((((((((.....(((....)))......)))))))))...))))((....)).................-.......))))--..))))..... ( -28.30) >DroWil_CAF1 61239 111 - 1 CACAGAAAGUGCAUUGCUGGCAAGGAGCAGAAAACUGAAGCGGAAGUUGAGACAUUUUUGCUAACAUUACGCGUAAGUAUCCUUC---UGCAUGCUUGUUUA------CUUGCUUAGGGC ..........(((.....((((((.(((((((......(((((((((......)))))))))........((....))....)))---))).).))))))..------..)))....... ( -26.30) >DroMoj_CAF1 55120 117 - 1 AACAGAAAAUGCAUUGCCGGUAAGGAGCAAAAGACCGAGGCGGAAGUUGAGACAUUUUUGCUCACAUUGCGCGUAAGUAUCCUUCAACUGGCGCA-ACUUAAACUGC--ACGUAUAAAUA ........((((...(((((((((((((((........(((....)))(((.((....)))))...))))((....)).)))))..))))))(((-........)))--..))))..... ( -32.30) >DroAna_CAF1 37701 116 - 1 GGCAGGAAGUGCAUUGCCGGCAAGGAGCAGAAAACCGAGGCGGAAGUCGAGACAUUUUUGCUCACACUGCGCGUAAGUAUCCUUGG-CGGGAUAA-AGUAGUACUUU--GGUUAUAAAUA (((..((((((((((.(((.((((((((((........(((....)))(((.((....)))))...))))((....)).)))))).-))).....-))).)))))))--.)))....... ( -40.20) >consensus GACAGGAAAUGCAUUGCCGGCAAGGAGCAGAAAACCGAGGCGGAAGUUGAGACAUUUUUGCUCACAUUGCGCGUAAGUAUCCUUAA_CUGAAUCA_ACUUAAACUGC__ACGCAUAAAUA ...(((..((((.((((..((((.(((((((((.....(((....)))......)))))))))...))))..)))))))))))..................................... (-20.00 = -20.20 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:05 2006