Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,801,220 – 10,801,354 |
Length | 134 |
Max. P | 0.994364 |
Location | 10,801,220 – 10,801,317 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 69.50 |
Mean single sequence MFE | -31.22 |
Consensus MFE | -13.60 |
Energy contribution | -15.12 |
Covariance contribution | 1.52 |
Combinations/Pair | 1.06 |
Mean z-score | -2.42 |
Structure conservation index | 0.44 |
SVM decision value | 2.47 |
SVM RNA-class probability | 0.994364 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10801220 97 + 22407834 ---CCUCCCCUCACCACACCAACCCGCCGCCACGCCCCCUUAUGCACGCCCCGGCUUCGAACGGCGGCAAGUUCAAGUCGCAAUGUUAGGCUUGAACGGA ---...............((.....((((((..((........))..((....)).......))))))..(((((((((.........))))))))))). ( -32.60) >DroPse_CAF1 36333 88 + 1 UUUGAUCUACUGUACAC-ACAUGCGG---CCGCA---CUGCAUGUGUGCCUCAGCGUCGAAUGGCA--AA--GCAAGUCCCAA-GAUGGGCUUGAGCAAU ((((((...(((..(((-((((((((---.....---)))))))))))...))).))))))..((.--..--.(((((((...-...))))))).))... ( -33.70) >DroSec_CAF1 34821 94 + 1 ---CCUCCCCUCACCACACCAGCCCG---CCACGCCCACUUAUGCACGCCCCGGCUUCGAACGGCGGCAAGUUCAAGUCGCAAUGUUAGGCUUGAACGGA ---...............((.(((.(---((..((........))..((....)).......))))))..(((((((((.........))))))))))). ( -28.70) >DroSim_CAF1 40045 94 + 1 ---CCUCCCCUCUUCAUCACAACCCG---CCACGCCCACCUAUGCACGCCCCGGCUUCGAACGGCGGCAAGUUCAAGUCGCAAUGUUAGGCUUGAACGGA ---..(((...............(((---((..((........))..((....)).......)))))...(((((((((.........)))))))))))) ( -27.40) >DroPer_CAF1 36047 88 + 1 UUUGAUCUACUGUACAC-ACAUGCGG---CCGCA---CUGCAUGUGUGCCUCAGCGUCGAAUGGCA--AA--GCAAGUCCCAA-GAUGGGCUUGAGCAAU ((((((...(((..(((-((((((((---.....---)))))))))))...))).))))))..((.--..--.(((((((...-...))))))).))... ( -33.70) >consensus ___CCUCCCCUCUACAC_ACAACCCG___CCACGCCCCCGUAUGCACGCCCCGGCUUCGAACGGCGGCAAGUUCAAGUCGCAAUGUUAGGCUUGAACGGA ..........................................(((.((((............))))))).(((((((((.........)))))))))... (-13.60 = -15.12 + 1.52)
Location | 10,801,241 – 10,801,354 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 82.53 |
Mean single sequence MFE | -40.97 |
Consensus MFE | -25.86 |
Energy contribution | -26.12 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.14 |
Mean z-score | -1.95 |
Structure conservation index | 0.63 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575160 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10801241 113 + 22407834 CGCCGCCACGCCCCCUUAUGCACGCCCCGGCUUCGAACGGCGGCAAGUUCAAGUCGCAAUGUUAGGCUUGAACGGAAAUGGCGGCUUAGCUAGUUUCUAGACAGCUUUUGUUU-- .(((((((..((...........((((((........))).)))..(((((((((.........)))))))))))...)))))))..((((.(((....))))))).......-- ( -44.50) >DroSec_CAF1 34842 110 + 1 CG---CCACGCCCACUUAUGCACGCCCCGGCUUCGAACGGCGGCAAGUUCAAGUCGCAAUGUUAGGCUUGAACGGAGUUGGCGGAUCAGCUAGUUUCUAGACAACUUUUGUUU-- ((---(((.((((..........((((((........))).)))..(((((((((.........))))))))))).))))))).....(((((...)))).)...........-- ( -36.30) >DroSim_CAF1 40066 110 + 1 CG---CCACGCCCACCUAUGCACGCCCCGGCUUCGAACGGCGGCAAGUUCAAGUCGCAAUGUUAGGCUUGAACGGAGUUGGCGGAUCAGCUAGUUUCUAGACAACUUUUGUUU-- ((---(((.((((..........((((((........))).)))..(((((((((.........))))))))))).))))))).....(((((...)))).)...........-- ( -36.30) >DroEre_CAF1 35672 106 + 1 CG---CCACGCC-CCUCAUGCACGCCCCAUCUUCGAACGGCGGCAAGUUCAAGUCGCAAUGUUAGGCUUGAACGGCGAUGGCGGGCUAGCGCCUUUCUAGCCAGCU---GUUU-- ((---(((((((-.....(((.((((............))))))).(((((((((.........))))))))))))).)))))((((((.......))))))....---....-- ( -46.20) >DroYak_CAF1 35956 109 + 1 CG---CCACGCCCCCUCAUGCACGCCCCGUCUUCGAACGGCGGCAAGUUCAAGUCGCAAUGUUAGGCUUGAACGGCGAUGGCGGAUCAGCUCAUUUCUAGCCAGCUUU-GUUU-- ((---(((((((...........(((((((......)))).)))..(((((((((.........))))))))))))).)))))....((((...........))))..-....-- ( -40.70) >DroAna_CAF1 34259 105 + 1 CG---CAGUG------CAUGCACGCUUUGGCUUCGUACGGCGGCAAGUUCAAGUCGCAAUGUUAGGCUUGAGCAGAGAUGGCCGAUCGGCCAUAUUGCGGCUAGCUUA-GUGCUG ..---(((..------(..((..((....)).......(((.(((((((((((((.........)))))))))....((((((....)))))).)))).))).))...-)..))) ( -41.80) >consensus CG___CCACGCCCCCUCAUGCACGCCCCGGCUUCGAACGGCGGCAAGUUCAAGUCGCAAUGUUAGGCUUGAACGGAGAUGGCGGAUCAGCUAGUUUCUAGACAGCUUU_GUUU__ ........((((......(((.((((.((....))...))))))).(((((((((.........)))))))))......))))................................ (-25.86 = -26.12 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:04 2006