Locus 3703

Sequence ID 2L_DroMel_CAF1
Location 10,799,583 – 10,799,677
Length 94
Max. P 0.953473
window5837

overview

Window 7

Location 10,799,583 – 10,799,677
Length 94
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 79.33
Mean single sequence MFE -22.17
Consensus MFE -14.21
Energy contribution -15.05
Covariance contribution 0.84
Combinations/Pair 1.16
Mean z-score -2.52
Structure conservation index 0.64
SVM decision value 1.43
SVM RNA-class probability 0.953473
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10799583 94 - 22407834
C----AAGUUUCAUGUAGGCUUGCUGCCUAGAUAAUAAACAUUAAUCUUAAUGGCAUUGUCGCUGGGCUAUCCAGCUACCAACUACCAGAUACUAGCU
.----.(((.((...(((((.....)))))((((((...(((((....)))))..))))))(((((.....)))))............)).))).... ( -24.50)
>DroSec_CAF1 33261 86 - 1
-----CAGUUUCAUGUAGGCUUGCUGCCUAGAUAAUAAACAUUAAGCUUAAUGGCAUUGUCGCUGGGCUAUUCAGCUACCAACUACCAA-------CU
-----((((......(((((.....)))))((((((...(((((....)))))..))))))))))((((....))))............-------.. ( -20.10)
>DroSim_CAF1 38486 76 - 1
C----CAGUUUCAUGUAGGCUUGCUGCCUAGAUAAUAAACAUUAAGCUUAAUGGCAUUG-----------UUCAGCUACCAACUACCAA-------CU
.----..((((.((.(((((.....))))).))...))))....((((.(((......)-----------)).))))............-------.. ( -13.80)
>DroEre_CAF1 34013 86 - 1
-----CAGUUUCAUGUAGGCUUGCUGUAUAGAUAAUAAACAUUAAGCCUAAUGGCAUUGUCGCUGGGCUAUCCAGCUACCAGCUACCAA-------CU
-----((((.((((.((((((((.(((.((.....)).))).)))))))))))).))))..((((((((....)))..)))))......-------.. ( -26.40)
>DroYak_CAF1 34276 79 - 1
-----CAGUUUCAUGUAGGCUUGCUGUAUAGAUAAUAAACAUUAAGCUUAAUGGCAUUGUCGCUGGGCUAUCCAGCUAC-------CAA-------CU
-----((((.((((.((((((((.(((.((.....)).))).)))))))))))).))))..(((((.....)))))...-------...-------.. ( -21.90)
>DroAna_CAF1 32817 79 - 1
UUUGGCCAUUUCAUGUAGGCUUGUUGUAUAGAUAAUAAACAUUAAGCUUAAUGGCAUUGUUGCUGGGCUAUCCGGCAAC-------------------
....(((((......((((((((.(((.((.....)).))).)))))))))))))...((((((((.....))))))))------------------- ( -26.30)
>consensus
_____CAGUUUCAUGUAGGCUUGCUGCAUAGAUAAUAAACAUUAAGCUUAAUGGCAUUGUCGCUGGGCUAUCCAGCUACCAACUACCAA_______CU
.....((((.((((.((((((((.((..((.....))..)).)))))))))))).))))..(((((.....)))))...................... (-14.21 = -15.05 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:01 2006