Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,798,611 – 10,798,709 |
Length | 98 |
Max. P | 0.872435 |
Location | 10,798,611 – 10,798,709 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 82.43 |
Mean single sequence MFE | -26.57 |
Consensus MFE | -18.37 |
Energy contribution | -19.00 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.29 |
Mean z-score | -2.82 |
Structure conservation index | 0.69 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.872435 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10798611 98 + 22407834 GGCAUGGCU-GCC-UUUUAGUAUUUGCCUAUGAAUGAAGUGGCUAUAUCUAAAGUGGCAACGGCUAUAUUGCUAUCCACAUAUAUUUUCAUUCAUAUCUC ((((..(((-(..-...))))...))))((((((((((((.(((((.......))))).))(((......))).............)))))))))).... ( -26.80) >DroSec_CAF1 32317 97 + 1 GGCAUGGCU-GCC-UUUUAGUAUUUGCCUAUGAAUGAAGUGGCUAUAUCUAAAGUGGCAACAGCUAUG-UGCUAGCCAUAUAUAUUUUCAUUCAUUGCUC ((((..(((-(..-...))))...)))).(((((((((((((((((((.....(((((....))))))-)).))))))).......)))))))))..... ( -27.91) >DroSim_CAF1 37551 97 + 1 GGCAUGGCU-GCC-UUUUAGUAUUUGCCUAUGAAUGAAGUGGCUAUAUCUAAAGUGGCAACGGCUAUG-UGCUAGCCAUAUAUAUUUUCAUUCAUAUCUC ((((..(((-(..-...))))...))))((((((((((((.(((((.......))))).))(((((..-...))))).........)))))))))).... ( -31.00) >DroEre_CAF1 33076 94 + 1 GGCAUGGUU-GCC-UUUUAGUAUUUGCCUAUGAAUGAAGUGGCUGUAUCUAAAGUGGCAACAGCUAUG-UGCUAGCCAUAUA--UU-UCAUUCAUUUGCC ((((....)-)))-...........((..(((((((((((((((((((.....(((((....))))))-))).))))))...--.)-))))))))..)). ( -31.20) >DroWil_CAF1 48787 82 + 1 GGCUUGGUUUGCCAUUUUAAUAUUUGCCUAUGAAUGAAGU----UUAUUUAUAGUGGUAACGGCCAUU-C--UG----------UC-CCCUUUGUUUGCU (((.......)))............((((((((((((...----)))))))))).((..((((.....-)--))----------).-.)).......)). ( -15.80) >DroYak_CAF1 33292 95 + 1 GGCAUGGUU-GCC-UUUUAGUAUUUGCCUAUGAAUGAAGUGGCUAUAUCUAAAGUGGCAACAGCUAUG-UGCUAGCCAUAUA--UUUUCAUUCAUUUCUU (((...(((-(((-((((((.....(((............))).....)))))).))))))(((....-.))).))).....--................ ( -26.70) >consensus GGCAUGGCU_GCC_UUUUAGUAUUUGCCUAUGAAUGAAGUGGCUAUAUCUAAAGUGGCAACAGCUAUG_UGCUAGCCAUAUA__UUUUCAUUCAUUUCUC ((((..(((.........)))...)))).((((((((((((((((........(((((....))))).....))))))).......)))))))))..... (-18.37 = -19.00 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:00 2006