Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,791,614 – 10,791,706 |
Length | 92 |
Max. P | 0.998424 |
Location | 10,791,614 – 10,791,706 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 77.10 |
Mean single sequence MFE | -37.73 |
Consensus MFE | -24.06 |
Energy contribution | -24.25 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.14 |
Mean z-score | -2.80 |
Structure conservation index | 0.64 |
SVM decision value | 3.10 |
SVM RNA-class probability | 0.998424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10791614 92 - 22407834 GUCAGAUGGGAGAAG---AAGGAGCAGGAGGAGCUAG------AGGGGCCUACUCCUCUGGCGCACUCAGUUAGUCCAAAGCCCUUUCCUUUCUUUGGCUU ((((((.(..((..(---((((.((..(((..(((((------(((((....))))))))))...))).(......)...))))))).))..))))))).. ( -36.90) >DroSec_CAF1 25402 85 - 1 GCCAGAUGGGAGGAGG---------------AGCUGGAGCU-UAGGGGCUUCCUUCUCUGGCGGACUCAGUUAGUCCAAAGCCCUUUCCUUUCUUUGGCUU ((((((.(..((((((---------------(((....)))-).(((((((((......)).(((((.....))))).))))))))))))..))))))).. ( -38.60) >DroSim_CAF1 27024 101 - 1 GCCAGAUGGGAGGAGGAGCAGGAGCAGGAGGAGCUGGAGCUGUAGGGGCUUCCUUCUCUGGCGGACUCAGUUAGUCCAAAGCCCUUUCCUUUCUUUGGCUU ((((((.(..((((((.((....((.(((((((..((((((.....))))))))))))).))(((((.....)))))...))))..))))..))))))).. ( -46.10) >DroYak_CAF1 26383 86 - 1 GUCAGAUGGGCGGAGAAGAAGG---------------AGCAGGAGGGGCAUUCUCUUCUGGCGGACUCAGUUAGUCCAAAGCCCUUUCCUUUCUUUGGCUU .......((.((((((((((((---------------.(((((((((.....)))))))...(((((.....)))))...)))))))...))))))).)). ( -29.30) >consensus GCCAGAUGGGAGGAGG__AAGG_________AGCUGGAGCU_UAGGGGCUUCCUCCUCUGGCGGACUCAGUUAGUCCAAAGCCCUUUCCUUUCUUUGGCUU ((((((.(((((((((...........................(((((......)))))((((((((.....)))))...))).))))))))))))))).. (-24.06 = -24.25 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:59 2006