Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 168,397 – 168,497 |
Length | 100 |
Max. P | 0.979340 |
Location | 168,397 – 168,497 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 91.96 |
Mean single sequence MFE | -18.98 |
Consensus MFE | -16.34 |
Energy contribution | -16.98 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.05 |
Mean z-score | -1.87 |
Structure conservation index | 0.86 |
SVM decision value | 1.83 |
SVM RNA-class probability | 0.979340 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 168397 100 + 22407834 CGAUGACAAAGCUUUUUCUGUUCUCAAUAUUCCAUUUUCUAUUUUAUGUUACUUCUUGCUCCCGCCAAGCGGUCUUCGGACCUUG-AGCUUUGUUCGCUCU .(((((((((((((...........................................(((.......)))((((....))))..)-))))))).))).)). ( -21.80) >DroSec_CAF1 14837 101 + 1 CGAUGACAAAGCUUUUUCUGUUCUCAAUUUUCCAUUUUCUAUUUUAUGUUACUUCUUGCUCCCGCCAAGCGGUCUUUGGAUCUUGUAGCUUUGCUCGCUCU .((((((((((((...........(((...((((.............((........))..((((...))))....))))..))).))))))).))).)). ( -16.90) >DroSim_CAF1 15001 101 + 1 CGAUGACAAAGCUUUUUCUGUUCUCAAUUUUCCAUUUUCUAUUUUAUGUUACUUCUUGCUCCCGCCAAGCGGUCUUUGGACCCUGUAGCUUUGGUCGCUCU .((((((((((((............................................(((.......)))((((....))))....)))))).)))).)). ( -17.10) >DroEre_CAF1 15042 100 + 1 CGAUGACAAAGCUCUUUCUGUUCUCAAUUUUCCAUUUUCUAUUUUAUUUCCCUUCUUGCACUCAUCAAGCGGUCUUUGGACCUUG-AGCUUUGGUCGCUCU .(((((((((((((........................................((((.......)))).((((....))))..)-)))))).)))).)). ( -20.00) >DroYak_CAF1 14892 100 + 1 CGAUGACAAAGCUUUUUCCGUUCUCGAUUUUCCAUUUUCUAUUUUAUUUUACUUCUCGCUCUCAUCAAGCGGUCUUUGGACCUUG-AGCUUUGGUCGCUCU .(((((((((((((...........................................(((.......)))((((....))))..)-)))))).)))).)). ( -19.10) >consensus CGAUGACAAAGCUUUUUCUGUUCUCAAUUUUCCAUUUUCUAUUUUAUGUUACUUCUUGCUCCCGCCAAGCGGUCUUUGGACCUUG_AGCUUUGGUCGCUCU .((((((((((((............................................(((.......)))((((....))))....))))))).))).)). (-16.34 = -16.98 + 0.64)
Location | 168,397 – 168,497 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 91.96 |
Mean single sequence MFE | -20.47 |
Consensus MFE | -17.96 |
Energy contribution | -17.76 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.10 |
Mean z-score | -1.79 |
Structure conservation index | 0.88 |
SVM decision value | 1.82 |
SVM RNA-class probability | 0.978758 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 168397 100 - 22407834 AGAGCGAACAAAGCU-CAAGGUCCGAAGACCGCUUGGCGGGAGCAAGAAGUAACAUAAAAUAGAAAAUGGAAUAUUGAGAACAGAAAAAGCUUUGUCAUCG .((..((.(((((((-...((((....))))((((.((....))...)))).....................................))))))))).)). ( -20.90) >DroSec_CAF1 14837 101 - 1 AGAGCGAGCAAAGCUACAAGAUCCAAAGACCGCUUGGCGGGAGCAAGAAGUAACAUAAAAUAGAAAAUGGAAAAUUGAGAACAGAAAAAGCUUUGUCAUCG .((..((.(((((((......((((....((((...))))..((.....))................))))...(((....)))....))))))))).)). ( -18.40) >DroSim_CAF1 15001 101 - 1 AGAGCGACCAAAGCUACAGGGUCCAAAGACCGCUUGGCGGGAGCAAGAAGUAACAUAAAAUAGAAAAUGGAAAAUUGAGAACAGAAAAAGCUUUGUCAUCG .((..(((.((((((....((((....))))((((.((....))...)))).....................................))))))))).)). ( -21.30) >DroEre_CAF1 15042 100 - 1 AGAGCGACCAAAGCU-CAAGGUCCAAAGACCGCUUGAUGAGUGCAAGAAGGGAAAUAAAAUAGAAAAUGGAAAAUUGAGAACAGAAAGAGCUUUGUCAUCG .((..(((.((((((-(..((((....)))).((..((...(.((......................)).)..))..))........)))))))))).)). ( -22.05) >DroYak_CAF1 14892 100 - 1 AGAGCGACCAAAGCU-CAAGGUCCAAAGACCGCUUGAUGAGAGCGAGAAGUAAAAUAAAAUAGAAAAUGGAAAAUCGAGAACGGAAAAAGCUUUGUCAUCG .((..(((.((((((-...((((....))))((((.....))))............................................))))))))).)). ( -19.70) >consensus AGAGCGACCAAAGCU_CAAGGUCCAAAGACCGCUUGGCGGGAGCAAGAAGUAACAUAAAAUAGAAAAUGGAAAAUUGAGAACAGAAAAAGCUUUGUCAUCG .((..((.(((((((....((((....)))).((((.(....))))).........................................))))))))).)). (-17.96 = -17.76 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:53 2006