| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,787,505 – 10,787,599 |
| Length | 94 |
| Max. P | 0.791173 |
| Location | 10,787,505 – 10,787,599 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 78.22 |
| Mean single sequence MFE | -30.27 |
| Consensus MFE | -10.78 |
| Energy contribution | -11.92 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.36 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.791173 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10787505 94 - 22407834 UUACCAGCUGUUUAAACAUUUUUGCUAACUCGGCCAUUGUUGCAGUGGAUACCCAGCAAUGGGUAA------GGGUAUG-----CAGGAACUACAAUUAGU-AGAA ..................(((((((..((((..((((((...)))))).((((((....)))))).------))))..)-----))))))((((.....))-)).. ( -28.00) >DroSec_CAF1 21273 94 - 1 UUACCAGCUGUUUAAACAUUUUUGCUAACUCGUCCGUUGUUGCAGGGGAUACCCAGCAAUGGGUAA------GGGUAUG-----CAGGAACUACAGUUGGU-AGUA (((((((((((.......(((((((..((((((((.(((...))).))))(((((....)))))..------))))..)-----))))))..)))))))))-)).. ( -37.10) >DroSim_CAF1 22907 94 - 1 UUACCAGCUGUUUAAACAUUUUUGCUAACUCGGCCGUUGUUGCAGCGGAUACCCAGCAAUGGGUAA------GGGUAUG-----CAGGAACUACAGUUGGU-AGUA (((((((((((.......(((((((..((((..((((((...)))))).((((((....)))))).------))))..)-----))))))..)))))))))-)).. ( -39.50) >DroEre_CAF1 22277 95 - 1 UUACCAGCUGUUUAAACAUUUUUGCUAACUCGGCCGUUGUUACGGGCCAUACCCCGCAAUGGGUAA------GGGUAUG-----CACGUUCUGAUGUCAGCCAGUC ......((((.....(((((..(((..((((((((((....)).)))).(((((......))))).------))))..)-----))......)))))))))..... ( -26.30) >DroYak_CAF1 22142 95 - 1 UUACCAGCUGUUUAAACAUUUUUGCUAACUCGCCCGUUGUUACAGCUGAUACCCCGCAAUGGGUGU------GGGUAUG-----CUUGAUCUAAAGUUAGUCAGUA ....(((((((...((((.....((......))....)))))))))))(((((((((.....))).------))))))(-----((.((.(((....)))))))). ( -26.10) >DroPer_CAF1 23017 93 - 1 U---CAGCUGUUUAAACAUUUUUUCCAACUCUGCCGUUGU----GUUGCUACCCUGCAAUGGGCAAUGAGCAGGGUAUAUCAUUCAAGAACAACAAUGAA------ (---((..((((...............(((((((((((((----(((((......)))))..)))))).)))))))...............)))).))).------ ( -24.61) >consensus UUACCAGCUGUUUAAACAUUUUUGCUAACUCGGCCGUUGUUGCAGCGGAUACCCAGCAAUGGGUAA______GGGUAUG_____CAGGAACUACAGUUAGU_AGUA .((((.(((((...(((..................)))...)))))...(((((......)))))........))))............................. (-10.78 = -11.92 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:57 2006