Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,786,994 – 10,787,087 |
Length | 93 |
Max. P | 0.762953 |
Location | 10,786,994 – 10,787,087 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 75.69 |
Mean single sequence MFE | -25.87 |
Consensus MFE | -15.82 |
Energy contribution | -16.74 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.21 |
Mean z-score | -1.52 |
Structure conservation index | 0.61 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.762953 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10786994 93 - 22407834 UUCAGCGCUGUGCUGGCGAAAAAAGUUAGCGAGUUUUGGUCAGAAA-----AAAGCGGUGUGGCCUAGUAUGCAAUUUUUUUUUUUUAAUCAGGCCUG ..((.((((...(((((.((((..(....)...)))).)))))...-----..)))).)).(((((.((...................)).))))).. ( -23.91) >DroPse_CAF1 22655 87 - 1 UUAAGCGCUUUUCCAGCGCUAACUUUAAGAGAACC-CG-CCACCAGGGAGAACUUCGUUAUGGGCAUGCCUUCGCU-----UU-UCAAA---UGUUAG ...((((((.....))))))........(((((((-(.-......)))........((...(((....)))..)))-----))-))...---...... ( -18.70) >DroSec_CAF1 20738 88 - 1 UUCAGCGCUGUGCUGGCGAAAAAAGUUAGCGAGCU-UGGCCACAAA-----AAAGCGGUGUGGACUAGUAUGCUAUUU----UUUUUAAUCAGGCCUG ..(((.((....((((..(((((((.(((((.(((-...(((((..-----.......)))))...))).))))).))----)))))..))))))))) ( -25.00) >DroSim_CAF1 22352 92 - 1 UUCAGCGCUGUGCUGGCGAAAAAAGUUAGCGAGUU-UGGCCACAAA-----AAAGCGGUGUGGCCAAGUAUGCAAUUUUUUUUUUUUAAUCAGGCCUG ..(((.(((........((((((((((.(((..((-((((((((..-----.......))))))))))..))))))))))))).........)))))) ( -29.83) >DroEre_CAF1 21736 86 - 1 UUCAGCGCUGUGCUAGCGAAAAAAGUUAGCGAGCU-UGGCCACAAA-----ACAGCGGUGUGGCCUAGAGUGCA-U-----UUUUUUAAUCAGGACUG ....(((((.(((((((.......)))))))..((-.(((((((..-----.......))))))).))))))).-.-----................. ( -28.00) >DroYak_CAF1 21567 87 - 1 UUCAGCGCUGUGCUGGCGAAAAAAGUUAGCGAGCU-UGGCCACAAA-----AAAGCGGUGUGGCCUAGUAUGCGCU-----UUUUUUAAUCAGGCCUG ...(((((..(((((((.......))))))).(((-.(((((((..-----.......))))))).)))..)))))-----................. ( -29.80) >consensus UUCAGCGCUGUGCUGGCGAAAAAAGUUAGCGAGCU_UGGCCACAAA_____AAAGCGGUGUGGCCUAGUAUGCAAU_____UUUUUUAAUCAGGCCUG ....(((((.(((((((.......))))))))))...(((((((..............)))))))......))......................... (-15.82 = -16.74 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:56 2006