Locus 3697

Sequence ID 2L_DroMel_CAF1
Location 10,778,391 – 10,778,486
Length 95
Max. P 0.500000
window5831

overview

Window 1

Location 10,778,391 – 10,778,486
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 92.95
Mean single sequence MFE -28.94
Consensus MFE -23.86
Energy contribution -24.54
Covariance contribution 0.68
Combinations/Pair 1.08
Mean z-score -1.28
Structure conservation index 0.82
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10778391 95 - 22407834
GCCUGUGGCACUGAAAGCGAUUCUAGGCGGUGGAUCUUAGCCGGCAAUUCGCUUGUUUGCCAGCUUGUUUAUAACAAUUCGACGGAAUUGUGCUU
((...(((((....((((((.....(.((((........)))).)...))))))...)))))...........(((((((....))))))))).. ( -28.70)
>DroSec_CAF1 12236 95 - 1
GCCUCUGGCACUGAAAGCGAUUCUAGGCUGUGGAUCUUAGCCGGCAUUUCGCUUGUUUGCCAGCUUGUUUAUAACAAUUCGCCGGAAUUGUGCUU
((..((((((....((((((.....(((((.......)))))......))))))...))))))..........(((((((....))))))))).. ( -31.60)
>DroSim_CAF1 12657 95 - 1
GCCUCUGGCACUAAAAGCGAUUCUAGGCUGUGGAUCUUAGCCGGCAUUUCGCUUGUUUGCCAGCUUGUUUAUAACAAUUGGCCGGAAUUGUGCUU
(((.((((((....((((((.....(((((.......)))))......))))))...)))))).((((.....))))..)))............. ( -28.90)
>DroEre_CAF1 13301 95 - 1
GCCCCUGGCACUGAAAGCCAUUCUAGGCUGUGGAUCUUAGCCGGCACUUCGCUUGUUUGCCAGCUUGUUUAUAACAAUUGCCCGGAAUUGUGCUU
(((...))).....(((((((((..((((((((((...(((.((((...........)))).))).)))))))......)))..))).)).)))) ( -25.10)
>DroYak_CAF1 12755 95 - 1
GCCCCUGGCACCGAAAGCCAUUCUAGGCUGUGGAUCUUAGCCGGCAUUUCGUUUGUUUGCCAGCUUGUUUAUAACAAUUGCCGGGAGUGGUGCUU
((((((((((.....((((......))))((((((...(((.((((...........)))).))).))))))......)))))))...))).... ( -30.40)
>consensus
GCCUCUGGCACUGAAAGCGAUUCUAGGCUGUGGAUCUUAGCCGGCAUUUCGCUUGUUUGCCAGCUUGUUUAUAACAAUUGGCCGGAAUUGUGCUU
((..((((((....((((((.....(((((.......)))))......))))))...))))))..........((((((......)))))))).. (-23.86 = -24.54 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:55 2006