Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,778,225 – 10,778,320 |
Length | 95 |
Max. P | 0.993070 |
Location | 10,778,225 – 10,778,320 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 94.32 |
Mean single sequence MFE | -19.01 |
Consensus MFE | -17.29 |
Energy contribution | -17.79 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.06 |
Structure conservation index | 0.91 |
SVM decision value | 2.37 |
SVM RNA-class probability | 0.993070 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10778225 95 - 22407834 -CUAUUGCAGCGGCAAAUCGCGUCACAUUUACAGGCAUUUGCAUAAUAACUUUCUGCC--UUGCGGAAAACAAUCAAAAGCUAAUUUACAAUGCAAUU -..((((((..(((((((.((.............))))))))........(((((((.--..)))))))...................)..)))))). ( -17.92) >DroSec_CAF1 12068 96 - 1 ACCAUUGCAGCGGCAAAUCGCGUCACAUUUACAGGCAUUUGCAUAAUAACUUUCUGCC--UUGCGGAAAACAAUCAAAAGCUAAUUUACAAUGCAAUU ...((((((..(((((((.((.............))))))))........(((((((.--..)))))))...................)..)))))). ( -18.02) >DroSim_CAF1 12489 96 - 1 ACCAUUGCAGCGGCAAAUCGCGUCACAUUUACAGGCAUUUGCAUAAUAACUUUCUGCC--UUGCGGAAAACAAUCAAAAGCUAAUUUACAAUGCAAUU ...((((((..(((((((.((.............))))))))........(((((((.--..)))))))...................)..)))))). ( -18.02) >DroEre_CAF1 13135 95 - 1 -CCACUGCAGCGGCAAAUCGCGUCACAUUUACGGGCAUUUGCAUAAUAACUUUCUGCC--UUGCGGAAAACAAUCAAAAGCUAAUUUACAAUGCAAUU -....((((..((((((((.(((.......))).).))))))........(((((((.--..)))))))...................)..))))... ( -19.00) >DroYak_CAF1 12589 95 - 1 -CCAUUGCAGCGGCAAAUCGCGUCACAUUUACACGCAUUUGCAUAAUAACUUUCUGCC--UUGCGGAAAACAAUCAAAACCUAAUUUACAAUGCAAUU -..((((((..(((((((.((((.........))))))))))........(((((((.--..)))))))...................)..)))))). ( -21.50) >DroAna_CAF1 11688 97 - 1 -CCUUUGCAACACCAAAUCGCCUCACAUUUACUGGCAUUUGCAUAAUAAUUUUCUGCUUUUUGCGGAAAACAAUCAAAAGCUAAUUUACAAUGCAAUU -...(((((....(((((.(((...........))))))))........((((((((.....)))))))).....................))))).. ( -19.60) >consensus _CCAUUGCAGCGGCAAAUCGCGUCACAUUUACAGGCAUUUGCAUAAUAACUUUCUGCC__UUGCGGAAAACAAUCAAAAGCUAAUUUACAAUGCAAUU ...((((((...((((((.((.............))))))))........(((((((.....)))))))......................)))))). (-17.29 = -17.79 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:54 2006