Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,776,345 – 10,776,461 |
Length | 116 |
Max. P | 0.883911 |
Location | 10,776,345 – 10,776,461 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.55 |
Mean single sequence MFE | -18.15 |
Consensus MFE | -7.04 |
Energy contribution | -7.64 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.13 |
Mean z-score | -2.05 |
Structure conservation index | 0.39 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883911 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10776345 116 - 22407834 UAAUCUGCACAAGCAUUUUUCU---AGAAUUAAAGUGAACUAUGAGGAAAAAUUCUUGGAAGCAAGU-UAAGCUACAAAAAUAUUUACUAAUUAAAGUAGUGCAAAAAAACUUUAAAAAA .....(((((.(((((((((((---....(((.((....)).))))))))))).((((....)))).-...)))...........((((......)))))))))................ ( -20.10) >DroSec_CAF1 10261 112 - 1 UAAUCUGCACAAGCAUUUUUUA---AGAAUUAAAGUGAACUAACAGGAAACAUUCUUAGAAGCAAGUAUAAGAUACACAAAUUUCUACUAAUUAAAGUAGUGCAAAUAAACUAAA----- .....(((((..((...(((((---(((((...((....))....(....)))))))))))))......................((((......)))))))))...........----- ( -19.10) >DroSim_CAF1 10678 104 - 1 UAAUCUGCACAAGCAUUUUAAGAAUAGAAUUAAAGUGAACUAAGGGGAAAAAUUCUUGGAAGCAAGUAGUAG---UGCAAAU-------------AAUAGUGCAAAUAAACUUAAAAAAA .....(((((...((((((((........))))))))..(((((((......)))))))..(((........---)))....-------------....)))))................ ( -19.30) >DroEre_CAF1 11305 117 - 1 UAAUCUGCACAAGCAUUUUUCC---AGAAUUAAAGUCAACUAAAAGGACAAAUUCUUAUACAUUUGUAUAAACUACACGAGUUUCUACUAAUUAAAACAGUGCACAUAAACUCAAAAAAG .....((((((((.((((.(((---....................))).)))).)))........(((.(((((.....))))).)))...........)))))................ ( -14.85) >DroYak_CAF1 10744 116 - 1 UAAUCUGCACAGGCAUUUUUCU---AGAAUUAAAGUGAAGUGAAAGGA-AAAUUCUUGGAAACAAGUAUAAGCUAUAGGAAUUUCUACUAAUUAAAGCAGUAUAAAUAAACUCGAAAAAA ....((((...(((((((((((---...(((.......)))...))))-)))).((((....)))).....))).(((.........)))......)))).................... ( -17.40) >consensus UAAUCUGCACAAGCAUUUUUCU___AGAAUUAAAGUGAACUAAAAGGAAAAAUUCUUGGAAGCAAGUAUAAGCUACACAAAUUUCUACUAAUUAAAGUAGUGCAAAUAAACUCAAAAAAA .....(((((...((((((............)))))).................((((....)))).................................)))))................ ( -7.04 = -7.64 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:53 2006