Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,767,128 – 10,767,218 |
Length | 90 |
Max. P | 0.832568 |
Location | 10,767,128 – 10,767,218 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 91.23 |
Mean single sequence MFE | -21.82 |
Consensus MFE | -18.85 |
Energy contribution | -18.97 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -2.31 |
Structure conservation index | 0.86 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.832568 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10767128 90 - 22407834 C-GACUCCACUGGCCAUACUUUUCACAUCAACUACAUUCGUACGCACAA----AGUGCAGGCAAGAAGGGAUUUCCCUUUAAAAAUAAAUGUGAA .-.....(((..(((.................(((....))).((((..----.)))).)))..((((((....))))))..........))).. ( -19.40) >DroSec_CAF1 903 95 - 1 CGGACUCCACUGGCCUCACUUUUCAUAUCAAGUACAUUCGUACGCACAAAUAAAGUGCAGGCAACAAGGGAUUUCUCUUUCAAAAUAAAUGUGAA .(((.(((.((.((((((((((.........((((....))))........)))))).))))....))))).))).................... ( -22.83) >DroSim_CAF1 920 95 - 1 CGGACUCCACUGGCCUCACUUUUCAUAUCAAGUACAUUCGUACGCACAAAUGAAGUGCAGGCAACAAGGGAUUUCUCUUUCAAAAUAAAUGUGAA .(((.(((.((.((((((((((.........((((....))))........)))))).))))....))))).))).................... ( -23.23) >consensus CGGACUCCACUGGCCUCACUUUUCAUAUCAAGUACAUUCGUACGCACAAAU_AAGUGCAGGCAACAAGGGAUUUCUCUUUCAAAAUAAAUGUGAA .......(((..(((................((((....))))((((.......)))).)))...(((((....)))))...........))).. (-18.85 = -18.97 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:50 2006