Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,753,570 – 10,753,660 |
Length | 90 |
Max. P | 0.796370 |
Location | 10,753,570 – 10,753,660 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 78.79 |
Mean single sequence MFE | -19.71 |
Consensus MFE | -12.62 |
Energy contribution | -13.43 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.12 |
Mean z-score | -1.69 |
Structure conservation index | 0.64 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796370 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10753570 90 - 22407834 GCAAAUGCUGCGUU---------------AUAACUCAUAGACGAAAGCAAACAUCAAAUCACCGGGCAUUUGCAAACAUCCUGGGCCGUCUAAGAAUAGCCCAAA ((((((((((.((.---------------...)).)...(.(....))................)))))))))........(((((..(......)..))))).. ( -21.20) >DroSec_CAF1 8679 90 - 1 GCAAAUGCUGCGUU---------------AUAACUCAUAGACGAAAGCAAACAUCAAACUACCGGGCAUUUGCAAACAUCCUGGGCCGUCUAAGAAUAGCCCAAA (((((((((..((.---------------............(....).............))..)))))))))........(((((..(......)..))))).. ( -21.57) >DroSim_CAF1 7851 90 - 1 GCAAAUGCUGCGUU---------------AUAACUCAUAGACGAAAGCAAACAUCAAACCACCGGGCAUUUGCAAACAUCCUGGGCCGUCUAAGAAUAGCCCAAA ((((((((((.((.---------------...)).)...(.(....))................)))))))))........(((((..(......)..))))).. ( -21.20) >DroEre_CAF1 7868 103 - 1 GCGAAUGCUGCGCUAAAUGCCAAGCGACCAUAAUUCAU--ACGAAACCAAACAUCAAACCACUGGGCAGUUGCAAACAUCCUGGGCCGUCUAAGAAUAGCCCAAA ((((.((((.((((........)))).......(((..--..)))...................)))).))))........(((((..(......)..))))).. ( -21.40) >DroYak_CAF1 8121 105 - 1 GCGAAUGCUGUGCUAAAUGCCAAGCGACCAUAAUUCAUAGACGAAAGCAAACAUCAAACCACUGGGCAUUUGCAAACAUCCUGGGCCGUCUAAGAAUAACCCCAA (((((((((.((((........)))).............(.(....))................)))))))))........((((...((...)).....)))). ( -19.70) >DroAna_CAF1 7928 93 - 1 GCAAAUGCC------------AAACGGCCAUAAAUUUAAUCCAAAACUAAACAUUAAACCGCUCAGCAUUUGCAAACAUCCUGGGCCAGCUAAAAAUAACCGAAA ((((((((.------------...(((.......((((.........)))).......)))....))))))))........(((...............)))... ( -13.20) >consensus GCAAAUGCUGCGUU_______________AUAACUCAUAGACGAAAGCAAACAUCAAACCACCGGGCAUUUGCAAACAUCCUGGGCCGUCUAAGAAUAGCCCAAA (((((((((.......................................................)))))))))........(((((.((......)).))))).. (-12.62 = -13.43 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:46 2006