Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,740,628 – 10,740,720 |
Length | 92 |
Max. P | 0.971981 |
Location | 10,740,628 – 10,740,720 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 84.33 |
Mean single sequence MFE | -21.45 |
Consensus MFE | -17.51 |
Energy contribution | -16.68 |
Covariance contribution | -0.83 |
Combinations/Pair | 1.35 |
Mean z-score | -3.84 |
Structure conservation index | 0.82 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971981 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10740628 92 + 22407834 UACUUUAUGCUGCUCAUUUUACAUCCC-AAGGGAUAUACCCUUA---CCCAAGUUGGAGCCACAACGACUCCAACUAUUCCACGUCGCGUAUUUCC .....(((((.((..............-(((((.....))))).---....((((((((.(.....).)))))))).......)).)))))..... ( -22.80) >DroSec_CAF1 9980 92 + 1 UACUUUAUGCUGCUCAUUUUACAUCCC-AAGGGAUAUACCCUUA---CCCAAGUUGGAGCCACAACGACUCCAACUAUUCCACGUCGCGUAUUUCC .....(((((.((..............-(((((.....))))).---....((((((((.(.....).)))))))).......)).)))))..... ( -22.80) >DroSim_CAF1 10035 92 + 1 UACUUUAUGCUGCUCAUUUUACAUCCC-AAGGGAUAUACCCUUA---CCCAAGUUGGAGCCACAACGACUCCAACUAUUCCACGUCGCGUAUUUCC .....(((((.((..............-(((((.....))))).---....((((((((.(.....).)))))))).......)).)))))..... ( -22.80) >DroEre_CAF1 9840 92 + 1 UACUUUACGCUGCUCAUUUUACAUCCC-AAGGGAUACACCCCUA---UCCAAGUUGGAACUACAACGAUUCCAACUAUUCCACGUCGCGUAUUUCC .....(((((.((..............-.((((......)))).---....(((((((((......).)))))))).......)).)))))..... ( -22.00) >DroYak_CAF1 9983 95 + 1 UACUUUAUGCUGCUCAUUUUACAUCCC-AAGGGAUAUACCCUUACCACCCAAGUUGGGUCGCCAACGACUCCAACUAUUCCACGUCGCGUAUUUCC .....(((((.((..............-(((((.....)))))........((((((((((....)))).)))))).......)).)))))..... ( -24.80) >DroAna_CAF1 8797 91 + 1 -ACAUUACACUGCUCACUUUAGGUCCCCAUUGGACAUUCCCCUA--ACCCGUAUUGGAAACCAACUUGUUUCUACAAUUCCA-AUUGCGUAU-UCC -.....................((((.....)))).........--...((((((((((......((((....)))))))))-).))))...-... ( -13.50) >consensus UACUUUAUGCUGCUCAUUUUACAUCCC_AAGGGAUAUACCCUUA___CCCAAGUUGGAGCCACAACGACUCCAACUAUUCCACGUCGCGUAUUUCC .....(((((.((.........((((.....))))................(((((((((......).)))))))).......)).)))))..... (-17.51 = -16.68 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:42 2006