Locus 3686

Sequence ID 2L_DroMel_CAF1
Location 10,734,592 – 10,734,707
Length 115
Max. P 0.640823
window5815

overview

Window 5

Location 10,734,592 – 10,734,707
Length 115
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.76
Mean single sequence MFE -44.18
Consensus MFE -25.91
Energy contribution -26.33
Covariance contribution 0.42
Combinations/Pair 1.29
Mean z-score -1.67
Structure conservation index 0.59
SVM decision value 0.22
SVM RNA-class probability 0.640823
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10734592 115 + 22407834
-----CUCCACCCAGCGCACCAUGUGUUGGAUCAGCUCGCCGCAAGUAUCCAGGAUUAAAUGACGCUGGAUAAUGCCCAGUUGACUUUGGGCGAAAUCCCGCACCGACGCAUCCUUGGCA
-----..(((.(((((((.....)))))))....(((((..((...(((((((............))))))).(((((((......))))))).......))..))).)).....))).. ( -37.10)
>DroVir_CAF1 4811 120 + 1
ACGGCGUCCAGCCAGCGGCACAUAUGUUGCAACAGCUCGCCGCACGUAUCGAGUAUGAUGUGCUGCUGGAUGACGCCUAGUUGGCACUGGGCAUAGUCGCGCACAGACACGUCCUUGGCC
..((((((...((((((((((((.(((.((........)).)))(((((...)))))))))))))))))..)))))).....(((...((((...(((.......)))..))))...))) ( -51.70)
>DroEre_CAF1 3857 115 + 1
-----CUCCACCCAGCGCACCAUGUGUUGCAGGAGCUCGCCACAUGUAUCCAAGAUUAAAUGGCGCUGGAUAAUGCCCAGUUGACCUUGCGCGAAGUCCCGCACCGACGCAUCCUUGGCA
-----((((...((((((.....))))))..))))...((((.(((..((((((.((((.(((.((........))))).)))).)))).(((......)))...))..)))...)))). ( -36.10)
>DroYak_CAF1 3941 115 + 1
-----UUCCACCCAACGCACCAUGUGUUGCAGCAGCUCGCCACAUGUGUCCAAGAUCAAAUGGCGCUGGAUAAUGCCCAGUUGACCUUGGGCGAAGUCCCGCACCGACGCAUCCUUGGCG
-----.......((((((.....))))))........(((((.(((((((...........((.((.((((..(((((((......)))))))..)))).)).)))))))))...))))) ( -39.90)
>DroMoj_CAF1 4904 120 + 1
ACGGCGUCCAGCCAGCGGCACAUAUGCUGCAGCAGCUCGCCACAGGUGUCCAGUAUGAUGUGCUGCUGGAUGACGCCCAGUUGGCUGUGGGCAUAGUCCCGCACAGACACAUCCUUGGCC
..((((((...((((((((((((((((((..(((.((......)).))).)))))).))))))))))))..))))))..(((...((((((......))))))..)))............ ( -55.10)
>DroAna_CAF1 3769 115 + 1
-----GUCGAGCCAGCGCACCAUGUGCUGCAGCAGUUCGCCGCACGUGUCCAGUAUUAGGUGCCGCUGUAUGAUGCCCAGUUGUCCCUGGGCAUAGUCCCUCACAGAGGCGUCCUUGGCC
-----.....((((((....(((((((.((........)).)))))))....))...(((((((.((((((.((((((((......)))))))).)).....)))).)))).))))))). ( -45.20)
>consensus
_____GUCCACCCAGCGCACCAUGUGUUGCAGCAGCUCGCCACACGUAUCCAGGAUUAAAUGCCGCUGGAUAAUGCCCAGUUGACCUUGGGCAAAGUCCCGCACAGACGCAUCCUUGGCC
............((((((.....)))))).........((((.((((.((((........))..((.((((..(((((((......)))))))..)))).))...)).))))...)))). (-25.91 = -26.33 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:40 2006