Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,728,327 – 10,728,431 |
Length | 104 |
Max. P | 0.561836 |
Location | 10,728,327 – 10,728,431 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 80.50 |
Mean single sequence MFE | -28.40 |
Consensus MFE | -18.89 |
Energy contribution | -19.58 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.23 |
Mean z-score | -1.36 |
Structure conservation index | 0.66 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.561836 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10728327 104 + 22407834 ----A----UAAAUGUGCUCUCUAUCAAACAGGAAAAUCGCGAUGUUCGCACUUCUUGAGCAUCUGCUACUUGGCCACUGCCACAUUUAAACACAAUAAGUUCAUGGGAGUA ----.----......(((((((.....(((.........((((((((((.......)))))))).))....((((....))))................)))...))))))) ( -22.90) >DroVir_CAF1 2340 101 + 1 UCAUU----UGG-------GUUUAUCCAACAGGACGCUAUCGAUGCUCACAUUUUCUGAGCAUAUGCUACCUGGCCACGGCCACCAUGAAGCACACCAAGUUCAUGGGCGUU ....(----(((-------(....)))))...(((((.....(((((((.......)))))))........((((....))))(((((((.(.......))))))))))))) ( -30.10) >DroSec_CAF1 2041 108 + 1 UCUUA----UAAAUGUGCUCUCUAUCAAACAGGGAAAUCGCGAUGUUCGCACUUCUUGAGCAUCUGCUACUUGGCCACUGCCACAUUUAAGCACAAGAAGUUCAUGGGAGUG .....----.......((((((.................(((.....)))(((((((((((....)))...((((....))))..........))))))))....)))))). ( -28.00) >DroSim_CAF1 762 108 + 1 UGUUA----UAAAUGUGCUCUCUAUCCAACAGGGAAAUCGCGAUGUUCCCACUUCUUGAGCAUCUGCUACUUGGCCACUGCCACAUUUAAGCACAAGAAGUUCAUGGGAGUA .....----......(((((((.........(((((.........)))))(((((((((((....)))...((((....))))..........))))))))....))))))) ( -29.70) >DroEre_CAF1 2199 112 + 1 CAUUAAAACUGAAUCCUCUCUGUGUCCAACAGGAAAAUCUCGGUGCUCGCACUUCUUGAGCAUCUGCUACUUGGCCACUGCCACGUUCAAGCACAAGAAGUUCAUGGGAGUG .......(((((((..((.((((.....))))))..)).)))))((((.(((((((((.((...((..((.((((....)))).)).)).)).))))))))....).)))). ( -31.10) >DroYak_CAF1 1492 112 + 1 UAUUAAAUUUGAAUGUGCUCUCUAUUCAACAGGGAAAUCGCGGUGCUCGCACUUCUUGAGCAUCUGCUACUUGGCCACUGCCACGUUCAAGCACAAGAAGUUCAUGGGAGUA ...............(((((((.................(((.....)))((((((((.((...((..((.((((....)))).)).)).)).))))))))....))))))) ( -28.60) >consensus UAUUA____UAAAUGUGCUCUCUAUCCAACAGGAAAAUCGCGAUGCUCGCACUUCUUGAGCAUCUGCUACUUGGCCACUGCCACAUUUAAGCACAAGAAGUUCAUGGGAGUA ...............(((((((.....(((...........((((((((.......))))))))((((...((((....))))......))))......)))...))))))) (-18.89 = -19.58 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:37 2006