Locus 3683

Sequence ID 2L_DroMel_CAF1
Location 10,721,683 – 10,721,780
Length 97
Max. P 0.670690
window5811

overview

Window 1

Location 10,721,683 – 10,721,780
Length 97
Sequences 4
Columns 97
Reading direction forward
Mean pairwise identity 86.25
Mean single sequence MFE -19.40
Consensus MFE -14.77
Energy contribution -15.53
Covariance contribution 0.75
Combinations/Pair 1.15
Mean z-score -1.62
Structure conservation index 0.76
SVM decision value 0.29
SVM RNA-class probability 0.670690
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10721683 97 + 22407834
UGAGUAACUCUAUAAGCUUUCUGUUAACAACCUCUGUUAAUAUUUAGUAAAGACCUGCACCAUUGACUGCUUGCUUUACUGCUUAUUAAAAGUCCAA
......(((..((((((....((((((((.....))))))))...(((((((.(..(((........)))..))))))))))))))....))).... ( -19.90)
>DroSec_CAF1 52821 97 + 1
UGAGUAACUCGAUAAGCUUUCUGUUAACAUCUUCUGUUAAUAUUUAGUAAAGACCUGCACCAUAGACUGCUUGCUUUAUUGCUUAUUAAUAGUCAAA
(((.((....(((((((....((((((((.....))))))))...(((((((.(..(((........)))..)))))))))))))))..)).))).. ( -20.30)
>DroSim_CAF1 53725 97 + 1
UGAGUAACUCGAUAAGCUUUCUGUUAACAACAUCUGUUAAUAUUUAGUAAAGACCUGCACCAUAGACUGCUUGCUUUAUUGCUUAUUAAUAGUCGAA
........((((..(((.....)))........(((((((((..((((((((.(..(((........)))..)))))))))..))))))))))))). ( -20.00)
>DroYak_CAF1 52189 97 + 1
UGUGGUACUCGGUAAGCUUUCUGUUAACAACUUAUGUUAAUAUUUAGUAAGGUUCUGCACCAUUGACUGCAUGCUGUUUUGCGAUUUAAUUUUUAAG
.((.(((..(((((.((..((((((((((.....))))))))........(((.....)))...))..)).)))))...))).))............ ( -17.40)
>consensus
UGAGUAACUCGAUAAGCUUUCUGUUAACAACUUCUGUUAAUAUUUAGUAAAGACCUGCACCAUAGACUGCUUGCUUUAUUGCUUAUUAAUAGUCAAA
..........(((((((....((((((((.....))))))))...(((((((.(..(((........)))..))))))))))))))).......... (-14.77 = -15.53 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:36 2006