Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,720,676 – 10,720,777 |
Length | 101 |
Max. P | 0.564575 |
Location | 10,720,676 – 10,720,777 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 75.92 |
Mean single sequence MFE | -27.83 |
Consensus MFE | -22.49 |
Energy contribution | -22.93 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.05 |
Mean z-score | -0.97 |
Structure conservation index | 0.81 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564575 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10720676 101 - 22407834 CAUCGCCAUCUCCACCCCCCCACAGAAUUCCAUCUCCAUUCCCACUGGAGCUGCCAAGUGAGGCGUUAAGCAGCGGCUAUGCAGUCAACAUUGGCAGACUG ......................(((........(((((.......)))))(((((((.(((.((((..(((....)))))))..)))...))))))).))) ( -26.40) >DroSim_CAF1 52706 92 - 1 -----CCAUCUCCUG---CCCCG-AAAUCCCAUCACCAUUCCCGCUGGAGCUGCCAAGUGAGGCGUUAAGCGGCGGCCAUGCCGUCAACAUUGGCAGACUG -----....((((.(---(...(-((............)))..)).))))(((((((((...((.....))((((((...)))))).)).))))))).... ( -28.60) >DroEre_CAF1 53271 83 - 1 CGUCACU------------------AUUCCCAUCUCCAUUCCCGCUGGAGUUGCCAAGUGAGGCGUUAAGCGGCGGCGAUGCCGUCAACAUUGGCAGACUG .(((...------------------........(((((.......))))).((((((.(((((((((..((....)))))))).)))...))))))))).. ( -28.50) >consensus C_UC_CCAUCUCC_____CCC____AAUCCCAUCUCCAUUCCCGCUGGAGCUGCCAAGUGAGGCGUUAAGCGGCGGCCAUGCCGUCAACAUUGGCAGACUG .................................(((((.......)))))(((((((.((((((((...((....)).))))).)))...))))))).... (-22.49 = -22.93 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:35 2006