Locus 3681

Sequence ID 2L_DroMel_CAF1
Location 10,717,525 – 10,717,633
Length 108
Max. P 0.618975
window5809

overview

Window 9

Location 10,717,525 – 10,717,633
Length 108
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 76.31
Mean single sequence MFE -24.77
Consensus MFE -15.35
Energy contribution -15.88
Covariance contribution 0.53
Combinations/Pair 1.05
Mean z-score -1.36
Structure conservation index 0.62
SVM decision value 0.17
SVM RNA-class probability 0.618975
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10717525 108 + 22407834
-------UUGAAAACGCAAGAACAGA-GCACACAUUUCUCUCGGUGU--AGCACCCUUUUAGGUUUUGUUUUUGCCUCAAGCACGCUCGAGAUGCAAAGUAAAUGCAAAACCACAGCA
-------........((.........-((((((..........))))--.)).........(((((((((((((((((.((....)).)))..)))))).....))))))))...)). ( -24.80)
>DroSec_CAF1 48524 109 + 1
-------CUGAAAAGACAAGGAAAGAAGCACACAUUUUUUUCUGUGU--AGCACCGUGUUAGGUUUUGUUUUGGCCUCAAGCACGCUCGAGAUGCAAAGUAAAUGCAAAACCACAGCA
-------(((....((((.((......(((((((........)))))--.)).)).)))).((((((((.((.(((((.((....)).)))..))......)).)))))))).))).. ( -23.80)
>DroSim_CAF1 49428 109 + 1
-------CUGAAAAGGCAAGGAAAGAGGCACACUUUUCUCUCUGUGU--AGCACCGUUUUAGGUUUUGUUUUUGCCUCAAGCACGCUCGAGAUGCAAAGUAAAUGCAAAACCACAGCA
-------((....))((..((((.(..((((((..........))))--.))..).)))).(((((((((((((((((.((....)).)))..)))))).....))))))))...)). ( -27.00)
>DroEre_CAF1 49661 115 + 1
CACUUAACCGCAAAAACAAGAAAAUA-UCACAUAUUUCUCUCCCUGU--AGCCACGUUUUAGGUUUUGUUUUUGCCUCAAGCACGCUCGAGAUGCAAAGUAAAUGCAAAACCACAGCA
.........((.(((((.((((((((-(...)))))).)))....((--....))))))).(((((((((((((((((.((....)).)))..)))))).....))))))))...)). ( -21.80)
>DroYak_CAF1 47902 111 + 1
CAUUUAACCACAAAGAAAAGCGAAGA-GC----UUUUCUCUCUGUGU--AGCAACGUUUUAGGUUUUGUUUUUGCCUCAAGCACGCUCGAGAUGCAAAGUAAAUGCAAAACCACAGCA
........((((.((((((((.....-))----))))))...)))).--......(((...(((((((((((((((((.((....)).)))..)))))).....))))))))..))). ( -29.80)
>DroAna_CAF1 48973 86 + 1
------------------------------AAAUUUUAUCACUGUGUGCUGCAUC--UUGUGGUUCUGCUGCUGCCUCAAGCACACUAGAGAUGCAAAGUAAAUGCAAAACCACAGCA
------------------------------...........((((((((((((((--((.((((..((((.........)))).))))))))))))........)))....))))).. ( -21.40)
>consensus
_______CUGAAAAGACAAGAAAAGA_GCACACAUUUCUCUCUGUGU__AGCACCGUUUUAGGUUUUGUUUUUGCCUCAAGCACGCUCGAGAUGCAAAGUAAAUGCAAAACCACAGCA
.............................................................(((((((((((((((((.((....)).)))..)))))).....))))))))...... (-15.35 = -15.88 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:34 2006