Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,159,312 – 1,159,414 |
Length | 102 |
Max. P | 0.681855 |
Location | 1,159,312 – 1,159,414 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 82.27 |
Mean single sequence MFE | -39.10 |
Consensus MFE | -25.14 |
Energy contribution | -25.78 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.16 |
Mean z-score | -2.09 |
Structure conservation index | 0.64 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681855 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1159312 102 + 22407834 UGGACAUGGCCGAUCUCUGUCGAUCCACCAA---CGCGGACACGGGCAGCUGCUUAAAGUGGCCACCCGUAGCCAGUCCCAGCAAACUGGAGAACCAGCCCAAAA .((((.(((..((((......))))..))).---...((..(((((..((..(.....)..))..)))))..)).)))).......((((....))))....... ( -35.20) >DroSec_CAF1 52798 102 + 1 UGGACAUGGCCGAUCUCUGUCGGUCCACCAG---CGCGGACACGGGCAGCUGCUUAAAGUGGCCACCCGUAGCCGGUCCCAGCAAACUGGAGAACCAGCCCAAAA (((...((((((((....))))).)))....---.((((..(((((..((..(.....)..))..)))))..))((((((((....)))).).))).)))))... ( -40.80) >DroSim_CAF1 47862 102 + 1 UGGACAUGGCCGAUCUCUGUCGGUCCACCAG---CGCGGACACGGGCAGCUGCUUAAAGUGGCCACCCGUAGCCGGUCCCAGCAAGCUGGAGAACCAGCCCAAAA .((((.((((((((....))))).)))....---..(((..(((((..((..(.....)..))..)))))..)))))))......(((((....)))))...... ( -43.00) >DroEre_CAF1 46680 102 + 1 UGGACAUGGCCGAUCUCUGUCGGUCCACCAG---CGGGGACACGCGCAGCUGCUUAAAGUGGCCACCCGGUCCCAUUCCCAGCAAACUGGAGAACCAGCCCAAAA (((...((((((((....))))).)))...(---(.(((((.((.(..((..(.....)..))..).))))))).(((((((....)))).)))...)))))... ( -36.70) >DroYak_CAF1 48051 102 + 1 UGGACAUGGCCGAUCUGUGUCGGUCAACCAG---CGGGGACACGGGCAGCUGCUUAAAGUGGCCACCCGGUCCAAGUCCCAGCAAACUGGAGAGCCUGCCCAAAA (((...((((((((....))))))))....(---(((((((.((((..((..(.....)..))..))))))))...((((((....)))).))..)))))))... ( -44.40) >DroAna_CAF1 52389 99 + 1 UGGAGCUGGCUGAGCUGUGUCAGCCAUCCAAUGAUGAGGGAACCGGCAGCCACUUUAAGUGGCCAG------CGAAGCCCAAGAAGCCUGAGAGCGCGCCAAUAA (((.((.((((..((((.....(((.(((.........)))...))).(((((.....))))))))------)..))))......((......)))).))).... ( -34.50) >consensus UGGACAUGGCCGAUCUCUGUCGGUCCACCAG___CGCGGACACGGGCAGCUGCUUAAAGUGGCCACCCGUAGCCAGUCCCAGCAAACUGGAGAACCAGCCCAAAA (((....(((((((....)))))))..))).............((((.(((((.....))))).............((((((....)))).))....)))).... (-25.14 = -25.78 + 0.64)
Location | 1,159,312 – 1,159,414 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 82.27 |
Mean single sequence MFE | -43.32 |
Consensus MFE | -26.16 |
Energy contribution | -26.17 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.40 |
Mean z-score | -1.98 |
Structure conservation index | 0.60 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549188 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1159312 102 - 22407834 UUUUGGGCUGGUUCUCCAGUUUGCUGGGACUGGCUACGGGUGGCCACUUUAAGCAGCUGCCCGUGUCCGCG---UUGGUGGAUCGACAGAGAUCGGCCAUGUCCA ...(..(((((....)))))..)...((((.((.((((((..((..(.....)..))..)))))).))...---.((((.((((......)))).)))).)))). ( -44.80) >DroSec_CAF1 52798 102 - 1 UUUUGGGCUGGUUCUCCAGUUUGCUGGGACCGGCUACGGGUGGCCACUUUAAGCAGCUGCCCGUGUCCGCG---CUGGUGGACCGACAGAGAUCGGCCAUGUCCA ...(((((.(((.(.((((....))))))))(((((((((..((..(.....)..))..)))))((((((.---...))))))...........))))..))))) ( -44.90) >DroSim_CAF1 47862 102 - 1 UUUUGGGCUGGUUCUCCAGCUUGCUGGGACCGGCUACGGGUGGCCACUUUAAGCAGCUGCCCGUGUCCGCG---CUGGUGGACCGACAGAGAUCGGCCAUGUCCA ....(((((((....)))))))....(((((((.((((((..((..(.....)..))..)))))).)))..---...((((.((((......)))))))))))). ( -45.80) >DroEre_CAF1 46680 102 - 1 UUUUGGGCUGGUUCUCCAGUUUGCUGGGAAUGGGACCGGGUGGCCACUUUAAGCAGCUGCGCGUGUCCCCG---CUGGUGGACCGACAGAGAUCGGCCAUGUCCA ...(((((..((((.((((....))))))))(((((((.(..((..(.....)..))..).)).)))))..---...((((.((((......))))))))))))) ( -42.50) >DroYak_CAF1 48051 102 - 1 UUUUGGGCAGGCUCUCCAGUUUGCUGGGACUUGGACCGGGUGGCCACUUUAAGCAGCUGCCCGUGUCCCCG---CUGGUUGACCGACACAGAUCGGCCAUGUCCA ...(((((((((((.((((....))))))...((((((((..((..(.....)..))..)))).))))..)---))((((((.(......).)))))).)))))) ( -43.80) >DroAna_CAF1 52389 99 - 1 UUAUUGGCGCGCUCUCAGGCUUCUUGGGCUUCG------CUGGCCACUUAAAGUGGCUGCCGGUUCCCUCAUCAUUGGAUGGCUGACACAGCUCAGCCAGCUCCA ..(((((((((..((((((...))))))...))------).((((((.....))))))))))))...........(((((((((((......)))))))..)))) ( -38.10) >consensus UUUUGGGCUGGUUCUCCAGUUUGCUGGGACUGGCUACGGGUGGCCACUUUAAGCAGCUGCCCGUGUCCGCG___CUGGUGGACCGACAGAGAUCGGCCAUGUCCA ...((((((((.((.((((....))))))))).......((((((.......((....)).((.((((((.......)))))))).........))))))))))) (-26.16 = -26.17 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:07 2006