Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,705,474 – 10,705,566 |
Length | 92 |
Max. P | 0.652793 |
Location | 10,705,474 – 10,705,566 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 75.77 |
Mean single sequence MFE | -22.84 |
Consensus MFE | -14.36 |
Energy contribution | -15.20 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.07 |
Mean z-score | -1.58 |
Structure conservation index | 0.63 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652793 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10705474 92 + 22407834 UUCGCGGUGGUGCAGCUGGAAGGCUGUACACCGAAAGAAAAUAUAGGGUUUCAUAUA-------AAGAUAUAUCAAAGUGCAAUUC----AGUAAGGCCACAA (((.(((((.(((((((....))))))))))))...))).......(((((.(((((-------....))))).....(((.....----.)))))))).... ( -23.30) >DroSec_CAF1 36644 91 + 1 UUCGCGGUGGUGCAGCUGGAAGGCUGUACACCGAAAGAAAAUAUUGGGUUUCAUAUG-------AAGAUAUAUUAAAGUGCA-UUC----GGUAAGGCUACAA (((.(((((.(((((((....))))))))))))...))).......(((((....((-------((..(((......)))..-)))----)...))))).... ( -24.10) >DroSim_CAF1 37482 102 + 1 UUCGCGGUGGUGCAGCUGGAACGCUGUACAUCGAAAGAAAAUAUUGGGUUUCAUAUAUAGAUAUAAGAUAUAUUAAAGUGCA-UUCAGUCAGUAAGGCUAAAA ...(((.(.(((((((......))))))).((....))..(((((..((.((.......)).))..))))).....).))).-...((((.....)))).... ( -21.30) >DroEre_CAF1 37750 87 + 1 UUCGCGGUGGUGCAGCUGGAAGGCUGUACACGGAAA-AAAAUAUUGGGUUUCCUGCACAGACA-CUCGUACAUCGAAGUGCA-UUC----AAGA--------- ...((((((.(((((((....))))))))))(((((-...........))))))))...(.((-((((.....)).))))).-...----....--------- ( -22.90) >DroYak_CAF1 35706 84 + 1 UUUGCGGUGGUGCAGCUGGAAGGCUGUACACGGAAA-AAAAUAUUGGAUUGGAU---UGGAUA-CAGAUAUAUCAAAGUGCG-UUC----AGUA--------- (((.((...((((((((....)))))))).)).)))-....((((((((.(.((---(.((((-......))))..))).))-)))----))))--------- ( -22.60) >consensus UUCGCGGUGGUGCAGCUGGAAGGCUGUACACCGAAAGAAAAUAUUGGGUUUCAUAUA__GA_A_AAGAUAUAUCAAAGUGCA_UUC____AGUAAGGC_A_AA (((.(((((.(((((((....))))))))))))...)))................................................................ (-14.36 = -15.20 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:29 2006