| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,702,703 – 10,702,819 |
| Length | 116 |
| Max. P | 0.823299 |
| Location | 10,702,703 – 10,702,819 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 75.71 |
| Mean single sequence MFE | -34.77 |
| Consensus MFE | -21.38 |
| Energy contribution | -21.63 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.823299 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10702703 116 + 22407834 AUAGGAGAUGAAAUCACCCGAUUUCCAUAUCUGCUGCAAGUGUUUGAUUUCCCGCGGAGAACCGCCUUGCAGUAGAUACUCGUAGUUAAAGGCUUCUAACAGCUGGAAAAGGAUAU .((.(((..((((((....))))))..(((((((((((((.((..(.(((((...))))).).)))))))))))))))))).))......((((......))))............ ( -34.80) >DroVir_CAF1 42642 113 + 1 GUACGAAAUGAAAUCACCCGAUUUCCAAAUCUGCUGCAAGUGUCGCAGCUCCCGUGCAGAGCCACCCUGUAGCAGAUGCUCAUAGCUAAAGAUUUCAAGCAACUGCAAG---AUAU ........(((((((.............((((((((((.(((.....((((.......)))))))..))))))))))((.....))....))))))).((....))...---.... ( -30.00) >DroEre_CAF1 35021 111 + 1 GUAGGAGAUGAAGUCGCCCGAUUUCCAUAUCUGCUGCAAGUGUUUGAUCUCCCUCGGGGAGCCGCCUUGCAGUAGAUACUCGUAGUUAAAGGCUUCCAACAGCUGAGCAG-----G .((.(((..((((((....))))))..(((((((((((((.((.....(((((...)))))..)))))))))))))))))).))(((...((((......)))).)))..-----. ( -41.00) >DroYak_CAF1 32974 116 + 1 GUAGGAGAUGAAGUCGCCCGAUUUCCAUAUCUGCUGCAAGUGUUUGAUCUCCCGCGGGGAACCGCCUUGCAGUAGAGACUCGUAGUUAAAAGCUUCCAACAGCUGAUAAUAGGAAU .((.(((..((((((....))))))....(((((((((((.....(......)((((....)))))))))))))))..))).))((((..((((......))))..))))...... ( -37.80) >DroMoj_CAF1 42328 113 + 1 GUAGGAUAUAAAAUCGCCCGAUUUCCAUAUCUGCUGCAGGUGUCGCAGCUCGCGCGCCGAGCCACCUUGGAGCAGGUGCUCAUAGCUGAAUAUUUCCAGCAGCUGGAAU---GGAU ...........((((....))))(((((.((.(((((.((((.(((.....)))))))((((.((((......)))))))).................))))).)).))---))). ( -38.50) >DroAna_CAF1 33497 112 + 1 GUAGGCAAUAAAGUCCCCCGAUUUCCAUAUCUGCUGGAGGUGUUUUAUCUCCCGGGCUGAACCACCUUGCAGCAAAUAUUCAUAGUUGAAUGGUUCCAGUAGCU----AAAGACAU ............(((...........((((.(((((((((((.((((.((....)).)))).)))))).))))).))))...((((((..((....)).)))))----)..))).. ( -26.50) >consensus GUAGGAGAUGAAAUCGCCCGAUUUCCAUAUCUGCUGCAAGUGUUUGAUCUCCCGCGCAGAACCACCUUGCAGCAGAUACUCAUAGUUAAAGGCUUCCAACAGCUGAAAA___AUAU ((.((((..((((((....))))))..(((((((((((((.((.....(((.......)))..)))))))))))))))...............)))).))................ (-21.38 = -21.63 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:28 2006