Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,690,856 – 10,690,948 |
Length | 92 |
Max. P | 0.758633 |
Location | 10,690,856 – 10,690,948 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 82.25 |
Mean single sequence MFE | -29.72 |
Consensus MFE | -21.20 |
Energy contribution | -21.15 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.30 |
Mean z-score | -2.00 |
Structure conservation index | 0.71 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.758633 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10690856 92 + 22407834 CGA--------AACCCGUUUGGGUGUCGUCACAGCCAACUUUGAGAUACA-------UUUGUGAUCGUACACAUGU--GUGACGAUUAGCGACUCACAUCCGAAGGGGU ...--------.((((.(((((((((.(((.(((......))).......-------....(((((((.(((....--))))))))))..)))..))))))))).)))) ( -32.10) >DroSec_CAF1 22390 92 + 1 CGA--------AACCCGUUUGGGUGUCGUCACAGCCAACUUUGAGAUACA-------UCUUUGAUCGUACACAUGU--GUGACGAUUAGAGACUCACAUCCGAAGGGGU ...--------.((((.((((((((((.(((.((....)).)))))))).-------(((((((((((.(((....--)))))))))))))).......))))).)))) ( -36.90) >DroSim_CAF1 23151 92 + 1 CGA--------AACCCGUUUGGGUGUCGUCACAGCAAACUUUGAGAUACA-------UCUGUGAUCGUACACAUGU--GUGACGAUUAGCGACUCACAUCCGAAGGGGU ...--------.((((.(((((((((.(((.(...........(((....-------))).(((((((.(((....--))))))))))).)))..))))))))).)))) ( -33.10) >DroEre_CAF1 23130 92 + 1 CGA--------AACCCGUUUGGGUGUCGUUACAGCCAACUCUGAGAUACA-------GCUGCGAUCGAAAAUAUGU--GUGACGAUUAGCGACUCACAUCCAAAGGGGU ...--------.((((.(((((((((.(((.(((......))).......-------(((..(((((...((....--))..)))))))))))..))))))))).)))) ( -26.80) >DroYak_CAF1 22003 92 + 1 CGA--------AACCGGUUUGGGUGUCGUCACAGCUAACUUUGAGAUACA-------GCUGUGAUCGAAAACAUGU--GUGACGAUUAGCGAUUCACAUCCAAAGGGGU ...--------.(((..(((((((.(((((((((((.............)-------))))))).)))........--((((((.....))..)))))))))))..))) ( -27.02) >DroAna_CAF1 21868 109 + 1 UAAAGUGGGAUAACCAGUUUCAGUGUCGUCAUAGCAAUCUUUGAACUCCCUAUUCUAGAUAAUAUCGGAAGCAUGUGAGUGACGAUUAGCGACUCAUAUCCAAAGGGGU .......(((((...((((.(...((((((((.(((((((..(((.......))).)))).....(....)..)))..))))))))..).))))..)))))........ ( -22.40) >consensus CGA________AACCCGUUUGGGUGUCGUCACAGCCAACUUUGAGAUACA_______GCUGUGAUCGUAAACAUGU__GUGACGAUUAGCGACUCACAUCCAAAGGGGU ............((((.(((((((((.(((.(((......)))..................((((((...((......))..))))))..)))..))))))))).)))) (-21.20 = -21.15 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:24 2006