| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,682,722 – 10,682,816 |
| Length | 94 |
| Max. P | 0.979446 |
| Location | 10,682,722 – 10,682,816 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 60.90 |
| Mean single sequence MFE | -13.20 |
| Consensus MFE | -9.98 |
| Energy contribution | -8.77 |
| Covariance contribution | -1.21 |
| Combinations/Pair | 1.53 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.76 |
| SVM decision value | 1.84 |
| SVM RNA-class probability | 0.979446 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10682722 94 + 22407834 GUGAGUUUUUUUUUUUUGUGUGAUUACUUUUUUUAUGUAAUUAAGUAAUUGCAUUUGCCACCCACAACAAGUCUUGAAUUUGGCCACUUACGGA ((((((...........(((..(((((((..((.....))..)))))))..)))..((((....(((......)))....)))).))))))... ( -21.20) >DroSim_CAF1 14786 76 + 1 GUGCAUUUUUUUUUUUUU---------------UGUGUGAUUAAGUAAUUAUAUUCGCCACCCAC---AAGUCUUGAAUUUGACUAUUUACGGA (((...............---------------((.((((.(((....)))...)))))).....---.((((........))))...)))... ( -8.70) >DroYak_CAF1 14048 71 + 1 GUGAAUUUUUA----AAA---------------AGUAUGAC---UUUGUUAUACUCGCAAACCACUA-AAGUCUUCAACUUGACCACUUACGUA (((........----...---------------((((((((---...))))))))............-..(((........))))))....... ( -9.70) >consensus GUGAAUUUUUUUUUUUUA_______________UGUGUGAUUAAGUAAUUAUAUUCGCCACCCAC_A_AAGUCUUGAAUUUGACCACUUACGGA ((((((............................((((((((....))))))))................(((........))).))))))... ( -9.98 = -8.77 + -1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:22 2006