Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,677,985 – 10,678,088 |
Length | 103 |
Max. P | 0.569253 |
Location | 10,677,985 – 10,678,088 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 73.96 |
Mean single sequence MFE | -35.45 |
Consensus MFE | -15.23 |
Energy contribution | -16.16 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.33 |
Mean z-score | -1.86 |
Structure conservation index | 0.43 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569253 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10677985 103 + 22407834 UCGCCGGAGUAUGAAGCCACCGAGGACGUGGACUCCUCCACCUAUAUGUCCGUGGAGGAGAGCACCAUUACGGUAGAUGUCGACUCGGACGUGAUAUUGACCA (((((.((((.(((..(.((((.....(((..(((((((((..........)))))))))..))).....)))).)...))))))).)..))))......... ( -34.00) >DroPse_CAF1 8725 94 + 1 CCUCCGC---------CCAAAGAAGAGGAGGAGUCCUCCUCGCUGUCACCCAUUGAGUCUGGAACCUUUACGAUGGAUAUUGACACGGAACUCAUCCUAACCA ..((((.---------........(((((((...)))))))..(((((.((((((.....(....)....))))))....))))))))).............. ( -25.80) >DroSec_CAF1 9280 103 + 1 UCGCCGGAGUAUGAAGCCACCGAGGAGGUGGACUCCUCCACCUAUAUGUCCGUGGAGGAGGGCACCAUUACGGUGGACGUCGACUCGGAUGUGAUAUUGACCA (((((.((((.(((..((((((..(.((((..(((((((((..........)))))))))..)))).)..))))))...))))))).)..))))......... ( -46.90) >DroSim_CAF1 9539 103 + 1 UCGCCGGAGUAUGAAGUCACCGAGGAGGUGGACUCCUCCACCUAUAUGUCCGUGGAGGAGGGCACCAUUACGGUGGACGUCGACUCGGAUGUGAUAUUGACCA (((((.((((.(((..((((((..(.((((..(((((((((..........)))))))))..)))).)..))))))...))))))).)..))))......... ( -44.40) >DroYak_CAF1 9914 103 + 1 UCGCCGGACUAUGAAGCCACAGCGGAGGUGGACUCCUCCACCUACAUGUCCGUUGAGGAGGGCACCAUCACGGUGGACGUCGACUCAGAUGUGAUCUUGACCA ((((((....(((..(((.(((((((((((((....))))))......))))))).....)))..)))..))))))(((((......)))))........... ( -35.80) >DroPer_CAF1 8707 94 + 1 CCUCCGC---------CCAAAGAAGAGGAGGAGUCCUCCUCGCUGUCACCCAUUGAGUCUGGAACCUUUACGAUGGAUAUUGACACGGAACUCAUCCUAACCA ..((((.---------........(((((((...)))))))..(((((.((((((.....(....)....))))))....))))))))).............. ( -25.80) >consensus UCGCCGGAGUAUGAAGCCACAGAGGAGGUGGACUCCUCCACCUAUAUGUCCGUGGAGGAGGGCACCAUUACGGUGGACGUCGACUCGGAUGUGAUAUUGACCA ((((((..........((.....)).(((((.((((((................))))))....))))).))))))(((((......)))))........... (-15.23 = -16.16 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:21 2006