| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,676,125 – 10,676,239 |
| Length | 114 |
| Max. P | 0.740666 |
| Location | 10,676,125 – 10,676,239 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.09 |
| Mean single sequence MFE | -21.50 |
| Consensus MFE | -9.30 |
| Energy contribution | -10.54 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.740666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10676125 114 + 22407834 AACAAUGGCAAUCAGCAAAAG--CCACUUGACAAAAUCCCCAGACAUUCCAUAAGUUUGCUUUUAUGGAAAAUGUCAAACACUCACAGCAUUAGCAUGAAAAUUGGCAGAAGCUUA---- .............(((....(--(((.((..((.........(((((((((((((......))))))))..)))))...........((....)).))..)).))))....)))..---- ( -22.60) >DroSim_CAF1 7536 114 + 1 AACAAUGGCAAUCAGCACAAG--CCACUUGACAAAAUCCCCAGACAUUCCAUAAGUUUGCUUUUAUGGAAAAUGUCAAACACUCAAAGCAUUAGCAUGAAAAUUGGCAAAAGUUUA---- .....((((.....)).)).(--(((.((..((.........(((((((((((((......))))))))..)))))...........((....)).))..)).)))).........---- ( -22.90) >DroEre_CAF1 7860 99 + 1 AACAAUGGCAAUCAGCACAAG--CCACUUGACAAAAUGCCCAGACAUUCCAUAAGUUUGCUUUUAUGGAAAAUGUCAAACUCUCACAGCAUUAGCAUGAAU------------------- ..(((((((...........)--))).)))............(((((((((((((......))))))))..))))).........((((....)).))...------------------- ( -20.20) >DroYak_CAF1 7971 114 + 1 AACAAUGGCAAUCGGCACAAG--CCACUUGACAAAAUCCCCAGACAUUCCAUAAGUAAGCUUUUGUGGAAAAUGUCAAACACUCACAGCAUUAGCAUGAAUAUUGGCAAACGUUUA---- .....((.(((..(((....)--))..))).))........((((.(((((((((......)))))))))..((((((....(((..((....)).)))...))))))...)))).---- ( -23.20) >DroAna_CAF1 7513 114 + 1 UACAAUGAGACUCACAACAAACUCAACUGGGCAAAAACCAGAGAGGCUC------UUGGCUUUUAUGGUAAAUGUCAAACACUCACAAUAUUAGCAUGAAAUUAAACAGAAAAGUAAAAU (((..((((............)))).(((((((...((((.((((((..------...)))))).))))...))))......(((...........))).......)))....))).... ( -18.60) >consensus AACAAUGGCAAUCAGCACAAG__CCACUUGACAAAAUCCCCAGACAUUCCAUAAGUUUGCUUUUAUGGAAAAUGUCAAACACUCACAGCAUUAGCAUGAAAAUUGGCAAAAGUUUA____ ...((((((.....))..........................(((((((((((((......))))))))..)))))............))))............................ ( -9.30 = -10.54 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:20 2006