Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,663,027 – 10,663,121 |
Length | 94 |
Max. P | 0.868221 |
Location | 10,663,027 – 10,663,121 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 82.42 |
Mean single sequence MFE | -22.00 |
Consensus MFE | -14.36 |
Energy contribution | -16.28 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.09 |
Mean z-score | -2.20 |
Structure conservation index | 0.65 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868221 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10663027 94 + 22407834 GCUUGAGUUGCCUCUUGCAUUGACAUUGGUUUUCCACGGCAACUUUGUGUUGUUUCUAUAAUACCGCUGUAUAGAUU-UUCUAUACGGCAUUAUC ....((((((((((.......))...(((....))).)))))))).(((((((....))))))).(((((((((...-..)))))))))...... ( -29.40) >DroSec_CAF1 16200 94 + 1 GCUUCAGUUCCCUCUUGCAUUGACAUUGGUUUUCCACGGCGACUUUGUGUUGUUUCUAUAACACGGAUGUAUAGAUU-UUCUAUACGGCAUUAUC (((...(((.((((.......))...(((....))).)).)))((((((((((....)))))))))).((((((...-..)))))))))...... ( -20.80) >DroSim_CAF1 16158 94 + 1 GCUUGAGUUCCCUCUUGCAUUGACAUUGGUUUUCCACGGCGACUUUGUGUUGUUUCUAUAACACCGCUGUAUAGAUU-UUCUAUACGGCAUUAUC ((..(((....)))..)).(((.(..(((....)))..))))....(((((((....))))))).(((((((((...-..)))))))))...... ( -26.80) >DroEre_CAF1 18664 79 + 1 GCUUGAGCUCCUCCUUGCAUUGACAUUG--------------UUUUCUGUUGUAUCUAUAACACCGCUGUAUAGAG--UUCUCUACGGCAUUAUU ((..(((...)))...))..........--------------.....((((((....))))))..((((((.((..--..)).))))))...... ( -14.20) >DroYak_CAF1 17197 94 + 1 GCUUGAGUUCC-CAUUGCAUUGACAUUGGAUUUCCACGGCGAUUUUGUGUUGUGCCUAUAACACCACAGAAUAGAUUCUUCUAUACAGCAAUAUU ...........-.(((((((((.(..(((....)))..)))))((((((.(((.......))).))))))(((((....)))))...)))))... ( -18.80) >consensus GCUUGAGUUCCCUCUUGCAUUGACAUUGGUUUUCCACGGCGACUUUGUGUUGUUUCUAUAACACCGCUGUAUAGAUU_UUCUAUACGGCAUUAUC ((..(((....)))..))............................(((((((....))))))).((((((((((....))))))))))...... (-14.36 = -16.28 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:12 2006