Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,657,167 – 10,657,269 |
Length | 102 |
Max. P | 0.992143 |
Location | 10,657,167 – 10,657,269 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 73.60 |
Mean single sequence MFE | -17.90 |
Consensus MFE | -9.81 |
Energy contribution | -10.32 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.14 |
Mean z-score | -2.49 |
Structure conservation index | 0.55 |
SVM decision value | 2.31 |
SVM RNA-class probability | 0.992143 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10657167 102 - 22407834 A------AACAGACAUUUGGCAACCCAAAAUGCCUCUGCCAAAUGAGCAAAAAACACU--GAUUAUUUGCCAUCUAAAGGAUAAGUAGUCAAAUUUUGAUAAAAAAAAAA--- .------..(((((((((((((..............)))))))))............(--(((((((((((.......)).))))))))))...))))............--- ( -22.04) >DroSec_CAF1 10377 102 - 1 A------AACAGACAUUUGGCAACCGAAAAAGACUCUGCCAAAUGAGCAUAAGAAAC-----UUAUUUGCCAGGUAAAGGAUAAGUAGUUCAAUUUUGAUAAAAAAAAAACCA .------..(((((((((((((..............))))))))).......(((((-----((((((..........))))))))..)))...))))............... ( -17.44) >DroSim_CAF1 10274 86 - 1 A------AACAGACAUUUGGCAAC---------------CAAAUGAGCAUAAGAAACU--GCUUAUUUGCCAGCUAAAGGAUAAGUAGUUCAAUUUUGAUAAAAAAAAA---- .------..((((..((((((...---------------((((((((((........)--)))))))))...))))))((((.....))))...))))...........---- ( -18.70) >DroEre_CAF1 12649 105 - 1 -GAAAUAAAUAAACUUUUGCAAUCCAAAAAGGCCUAUACCAAAAGCGCAUUAGACACUUUGCAUAUUUGCCAGCUAAAGGAUAAGUAGUCCAAUUUUGAUAAAAAA------- -.......................(((((.(((..(((...((((.((....).).))))...)))..))).......((((.....))))..)))))........------- ( -13.40) >consensus A______AACAGACAUUUGGCAACC_AAAA_GCCUCUGCCAAAUGAGCAUAAGAAACU__GCUUAUUUGCCAGCUAAAGGAUAAGUAGUCCAAUUUUGAUAAAAAAAAA____ .........(((((((((((((..............)))))))))..................((((((((.......)).)))))).......))))............... ( -9.81 = -10.32 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:11 2006