Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,650,434 – 10,650,536 |
Length | 102 |
Max. P | 0.961356 |
Location | 10,650,434 – 10,650,536 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 88.47 |
Mean single sequence MFE | -36.82 |
Consensus MFE | -27.38 |
Energy contribution | -28.52 |
Covariance contribution | 1.14 |
Combinations/Pair | 1.16 |
Mean z-score | -4.40 |
Structure conservation index | 0.74 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961356 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10650434 102 + 22407834 UAAAUUGCUCACGUGUGUGACACAUUUCUUUCGGCG---GA-GUCAC---GACAAUGGCGACAAGCGGAAGCGGAAACGCGAAAUGUGAAAAAUGCGCAGAGCAAACAA- ....((((((..((((((..((((((((.(((.(((---..-((((.---.....))))..)..)).)))(((....)))))))))))....)))))).))))))....- ( -38.60) >DroVir_CAF1 14329 96 + 1 UAAAUUGCUCACGUGUGUGACACAAUUU---GGGAGCAC-GGGCAGC---GACAAUGA-------CGGAAGCGGAAGCGAGAAAUGUGAAAAAUGCGCACGCUGAACAAA .....(((((...((((...))))....---..))))).-(..((((---(.......-------.....((....))......((((.......)))))))))..)... ( -26.00) >DroSec_CAF1 3555 102 + 1 UAAAUUGCUCACGUGUGUGACACAUUUCUUUCGGCG---GA-GUCAC---GACAAUGGCGACAAGCGGAAGCGGAAACGCGAAAUGUGAAAAAUGCGCAGAGCAAACAA- ....((((((..((((((..((((((((.(((.(((---..-((((.---.....))))..)..)).)))(((....)))))))))))....)))))).))))))....- ( -38.60) >DroSim_CAF1 3530 102 + 1 UAAAUUGCUCACGUGUGUGACACAUUUCUUUCGGCG---GA-GUCAC---GACAAUGGCGACAAGCGGAAGCGGAAACGCGAAAUGUGAAAAAUGCGCAGAGCAAACAA- ....((((((..((((((..((((((((.(((.(((---..-((((.---.....))))..)..)).)))(((....)))))))))))....)))))).))))))....- ( -38.60) >DroEre_CAF1 5891 105 + 1 UAAAUUGCUCACGUGUGUGACACAUUUCUUUCGGCG---GA-GUCACAGCGACAAUGGCGAAAAGCGGAAGCGGAAACGCGAAAUGUGAAAAAUGCGCAGAGCAAACAA- ....((((((..((((((..(((((((((((((.((---..-(((.....)))..)).))))).......(((....)))))))))))....)))))).))))))....- ( -40.50) >DroYak_CAF1 4202 102 + 1 UAAAUUGCUCACGUGUGUGACACAUUUCUUUCGGCG---GA-GUCAC---GACAAUGGCGAAAAGCGGAAGCGGAAACGCGAAAUGUGAAAAAUGCGCAGAGCAAACAA- ....((((((..((((((..((((((((.(((.((.---..-((((.---.....)))).....)).)))(((....)))))))))))....)))))).))))))....- ( -38.60) >consensus UAAAUUGCUCACGUGUGUGACACAUUUCUUUCGGCG___GA_GUCAC___GACAAUGGCGACAAGCGGAAGCGGAAACGCGAAAUGUGAAAAAUGCGCAGAGCAAACAA_ ....((((((..((((((..((((((((.(((.((.......((((.........)))).....)).)))(((....)))))))))))....)))))).))))))..... (-27.38 = -28.52 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:08 2006