Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,157,361 – 1,157,451 |
Length | 90 |
Max. P | 0.988040 |
Location | 1,157,361 – 1,157,451 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 84.11 |
Mean single sequence MFE | -23.93 |
Consensus MFE | -19.28 |
Energy contribution | -19.64 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.05 |
Mean z-score | -2.59 |
Structure conservation index | 0.81 |
SVM decision value | 2.10 |
SVM RNA-class probability | 0.988040 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1157361 90 - 22407834 GAUUUCGGUGGAAGAAAAUAACACCUCGCCUUAUAAGGUGGGCGAUUUUUCUUCUACCAUUACGAACACCCCC--CACCCC-UGGUAAUUCGA ......((((((((((((...(.((.(((((....))))))).)..))))))))))))....((((.(((...--......-.)))..)))). ( -29.30) >DroSec_CAF1 50866 89 - 1 GAUUUCGGUGGAAGAAAAUAACACCUCGCCUUAUAAGGUGGGCGAUUUUCCUUCUACCAUUACGGA---CCCCCCUCCCCC-UGGUAAUACGA ......(((((((((((((.....(((((((....)))))))..))))).))))))))((((((((---......)))...-..))))).... ( -25.20) >DroSim_CAF1 45916 93 - 1 GAUUUCGGUGGAAGAAAAUAACACCUCGCCUUAUAAGGUGGGCGAUUUUCCUUCUACCAUUACCGAAACCCCCCCUCCCCCUUGGUAAUUCGA ......(((((((((((((.....(((((((....)))))))..))))).))))))))((((((((...............)))))))).... ( -27.66) >DroEre_CAF1 44590 82 - 1 UUUUUCGGUGGAAAAAAAUAAGACCUCGCCUUAUAAGGUGGGCGAUUUUCCUUUUACCAUUUU-----CCCC-----CCAC-CGGUAACUCGA ....(((((((...............(((((....)))))((..(........)..)).....-----....-----))))-)))........ ( -18.70) >DroYak_CAF1 45791 80 - 1 GAUUUCGGUGGAAA-AAAUAACACCUCGCCUUAUAAGGUGGGCGAUUUUCCUUUUACCAUU-U-----CCCC-----CCAC-CGGUAACUCGA ((..(((((((...-...........(((((....)))))((..(........)..))...-.-----....-----))))-)))....)).. ( -18.80) >consensus GAUUUCGGUGGAAGAAAAUAACACCUCGCCUUAUAAGGUGGGCGAUUUUCCUUCUACCAUUAC__A__CCCCC____CCCC_UGGUAAUUCGA ......(((((((((((((.....(((((((....)))))))..))))).))))))))................................... (-19.28 = -19.64 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:04 2006