Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,624,564 – 10,624,656 |
Length | 92 |
Max. P | 0.525196 |
Location | 10,624,564 – 10,624,656 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 84.06 |
Mean single sequence MFE | -27.91 |
Consensus MFE | -18.08 |
Energy contribution | -18.22 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.14 |
Mean z-score | -2.37 |
Structure conservation index | 0.65 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525196 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10624564 92 - 22407834 GAGUGCUUUAUUAAAUUUCCUUUUUUAUUGUUGUGGCCGCAUUAAGUGGCCAAGGCUAGUCCGGAAUCAGCUGGGACCGGCUAUACAUCUAU--- ..(((........................((..(((((((.....)))))))..))(((.((((..((....))..))))))))))......--- ( -24.90) >DroPse_CAF1 5274 80 - 1 GAGUACUUUAUUAAAUUUCCUU-UUUAUUGUUGUGGCCGCAUUAAGUGGCCGAGGCUGGUCCCGGAUCAGCUGGGACCCGC-------------- ......................-......((..(((((((.....)))))))..)).((((((((.....))))))))...-------------- ( -28.90) >DroEre_CAF1 5113 95 - 1 GAGUGCUUUAUUAAAUUUCCUUUUUUAUUGUUGUGGCCGCAUUAAGUGGCCAAGGCUAGUCCGGAAUCAGCUGGGACCAGCUAUGCAUCUAUAUG ..((((..........((((.........((..(((((((.....)))))))..))......))))..(((((....)))))..))))....... ( -27.96) >DroYak_CAF1 4834 92 - 1 GAGUGCUUUAUUAAAUUUCCUUUAUUAUUGUUGUGGCCGCAUUAAGUGGCCAAGGCUAGUCCGGAAUCAGCUGGGACCAGCUACACAUCUAU--- ..(((...........((((...((((..((..(((((((.....)))))))..))))))..))))..(((((....))))).)))......--- ( -27.80) >DroAna_CAF1 4846 80 - 1 GAGUGCUUUAUUAAAUUUCCGUUUUUAUUGUUGUGGCCGCAUUAAGUGGCCAAGGCUAGCCGGGAAUCAUCUGGGAGCAC--------------- ..(((((((.....(((((((.((.....((..(((((((.....)))))))..)).)).)))))))......)))))))--------------- ( -29.00) >DroPer_CAF1 5461 80 - 1 GAGUACUUUAUUAAAUUUCCUU-UUUAUUGUUGUGGCCGCAUUAAGUGGCCGAGGCUGGUCCCGGAUCAGCUGGGACCCGC-------------- ......................-......((..(((((((.....)))))))..)).((((((((.....))))))))...-------------- ( -28.90) >consensus GAGUGCUUUAUUAAAUUUCCUUUUUUAUUGUUGUGGCCGCAUUAAGUGGCCAAGGCUAGUCCGGAAUCAGCUGGGACCAGC______________ .............................((..(((((((.....)))))))..))...(((((......))))).................... (-18.08 = -18.22 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:00 2006