Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,620,010 – 10,620,108 |
Length | 98 |
Max. P | 0.764296 |
Location | 10,620,010 – 10,620,108 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 78.93 |
Mean single sequence MFE | -29.78 |
Consensus MFE | -21.01 |
Energy contribution | -21.10 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.30 |
Mean z-score | -1.40 |
Structure conservation index | 0.71 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.764296 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10620010 98 + 22407834 UCGGCUA-AAUCUCCGUAUCUCAUCCGUAAUCAGGAAUCCUGUAUGGAGUUCGAGCGCCUCGUCCACGCUCAGUGUGAGGCCCUCAUUCAGGCCAUCCA ..((((.-...((((((((....(((.......))).....))))))))...(((.((((((..(((.....))))))))).))).....))))..... ( -34.60) >DroPse_CAF1 132 92 + 1 CCGUUCU-CAGCUCCGGUU------UUUAAUCAGGAAUCCUGCAUGGAAUUCGAGCGUCUGGUGCACGCCCAGUGCGAGGCCCUCAUCCAGGCCAUCCA .......-..((((..(((------((....((((...))))...)))))..))))((((((.((((.....))))(((...)))..))))))...... ( -28.10) >DroEre_CAF1 131 95 + 1 UCGGCUA-AAUCU--GUAUCUCCUCCGUA-UCAGGAAUCCUGCAUGGAGUUCGAGCGCCUCGUCCACGCCCAGUGCGAGGCCCUAAUUCAGGCCAUCCA ..((((.-.....--.......((((((.-.((((...)))).))))))....((.((((((..(((.....))))))))).))......))))..... ( -30.90) >DroYak_CAF1 135 95 + 1 UCGGCUA-AAUCU--GUAUCUCAUCCGUA-UCAGGAAUCCUGCAUGGAGUUCGAGCGCCUUGUCCACGCCCAGUGUGAGGCACUCAUUCAGGCCAUCCA ..((((.-.....--........(((((.-.((((...)))).)))))....(((.(((((...(((.....))).))))).))).....))))..... ( -29.10) >DroAna_CAF1 142 97 + 1 CCGGCUUACAUUU--UUGAGUUAUCUAUGCACAGGAAUCCUGCAUGGAGUUCGAGCGACUUGUGCACGCCCAGUGCGAGGCUUUGAUUCAGGCCAUUCA ..((((.......--.(((((((((((((((..((...))))))))))....((((..((((..(.......)..)))))))))))))))))))..... ( -27.90) >DroPer_CAF1 132 92 + 1 CCGUUCU-CAGCUCCGGUU------UUUAAUCAGGAAUCCUGCAUGGAAUUCGAGCGUCUGGUGCACGCCCAGUGCGAGGCCCUCAUCCAGGCCAUCCA .......-..((((..(((------((....((((...))))...)))))..))))((((((.((((.....))))(((...)))..))))))...... ( -28.10) >consensus CCGGCUA_AAUCU__GUAUCUCAUCCGUAAUCAGGAAUCCUGCAUGGAGUUCGAGCGCCUCGUCCACGCCCAGUGCGAGGCCCUCAUUCAGGCCAUCCA ..((((...........................(((.(((.....))).)))(((.((((((..(.......)..)))))).))).....))))..... (-21.01 = -21.10 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:55 2006