| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,618,397 – 10,618,494 |
| Length | 97 |
| Max. P | 0.526454 |
| Location | 10,618,397 – 10,618,494 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 83.16 |
| Mean single sequence MFE | -29.70 |
| Consensus MFE | -20.75 |
| Energy contribution | -20.40 |
| Covariance contribution | -0.35 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.526454 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10618397 97 + 22407834 --UGUGCAUUUUCGU-------GGAAAUGG----------GUAGCGCUUAAAUGGGAAUAGGGCAUACAGCUAAUGAAUGUAAUCGUCAUAAGCUGCCCUUUUCGCUGCGGAAGAG --....((((((...-------.)))))).----------(((((.((.....))(((.((((((....(((.((((.((....)))))).))))))))).))))))))....... ( -28.70) >DroSec_CAF1 97951 97 + 1 --UGUGCAUUUUCGG-------GAAAAUGG----------GUAGCGCUUAAAUGGGGAUAGGGCAUACAGCUAAUGAAUGUAAUCGUCAUAAGCUGCCCUUUUCGCUGCGGAAGAG --......((..(((-------(((((.((----------(((((......((((.(((...((((.((.....)).)))).))).))))..)))))))))))).)))..)).... ( -28.30) >DroSim_CAF1 98411 97 + 1 --UGUGCAUUUUCGG-------GAAAAUGG----------GUAGCGCUUAAAUGGGGAUAGGGCAUAUAGCUAAUGAAUGUAAUCGUCAUAAGCUGCCCUUUUUGCUGCGGAAGAG --......((..(((-------.((((.((----------(((((......((((.(((...((((.((.....)).)))).))).))))..))))))).)))).)))..)).... ( -26.30) >DroEre_CAF1 98629 103 + 1 --UGUGCAUUUUUGGGAAAUGGGAAAAUGG----------GUAGCGCUUAAAUGGGGAUAGGGCAUACAGCUAAUGAAUGUAAUCGUCGUAAGCUGCCCUUUUCGCUGCC-AAGAG --.......((((((.(...(.(((((.((----------(((((......((((.(((...((((.((.....)).)))).))).))))..)))))))))))).)).))-)))). ( -30.80) >DroYak_CAF1 101536 97 + 1 --UGUGCAUUUUUCG-------GAAAAUGG----------GUAGCGCUUAAAUGGAGAUAGGGCAUACAGCUAAUGAAUGUAAUCGUCAUAAGCUGCCCUUUUCGCUGCGGAAGAG --......(((((((-------(((((.((----------(((((......(((..(((...((((.((.....)).)))).)))..)))..))))))))))))....))))))). ( -27.30) >DroAna_CAF1 99880 109 + 1 GCUGUCCGCUUUUUG-------GAGGAUGGCUCGAAGGAUGAAGUACUGAAGUGCAGGGCAGGCAUUCAGCUAAUGAAUGUAAUCGCCAUAAGCUGCCCUUUUCGAUGAGGAAAAG (((((((.((....)-------).)))))))((((((......((((....))))((((((.(((((((.....)))))))....((.....)))))))))))))).......... ( -36.80) >consensus __UGUGCAUUUUCGG_______GAAAAUGG__________GUAGCGCUUAAAUGGGGAUAGGGCAUACAGCUAAUGAAUGUAAUCGUCAUAAGCUGCCCUUUUCGCUGCGGAAGAG ......(((((((.........)))))))...........(((((.(......)((((.((((((....(((.((((.((....)))))).))))))))))))))))))....... (-20.75 = -20.40 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:54 2006