Locus 3652

Sequence ID 2L_DroMel_CAF1
Location 10,615,902 – 10,616,011
Length 109
Max. P 0.787310
window5762

overview

Window 2

Location 10,615,902 – 10,616,011
Length 109
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 95.72
Mean single sequence MFE -32.45
Consensus MFE -30.29
Energy contribution -30.73
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -1.94
Structure conservation index 0.93
SVM decision value 0.58
SVM RNA-class probability 0.787310
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10615902 109 + 22407834
UUGGGCCAACUGAGAGGCCCAACCGAGACGGCACUUAUCCACCUGAACGGUUUCGAUUAGGGUGAUUCACGAUUUUAAAAUCGGAUUUGUUGUGAAAACCCUUUCUCUU
(((((((........)))))))..(((((((.(((..((.....))..))).)))...(((((..((((((((...............)))))))).))))).)))).. ( -32.26)
>DroSec_CAF1 95459 109 + 1
UUGGGCCAACUGAGAGGCCCAACCAAGACGGCACUUAUCCACCUGAACGGUUUCGAUUAGGGUGAUUCACGAUUUUUAAAUCGGUUUUGUUGUCAAAAUCCUUUCUCUU
(((((((........)))))))....(((((((...(((..(((((.((....)).)))))..)))...(((((....)))))....)))))))............... ( -31.60)
>DroSim_CAF1 95933 109 + 1
UUGGGCCAACUGCGAGGCCCAACCGAGACGGCACUUAUCCACCUGAACGGUUUCGAUUAGGGUGAUUCACGAUUUUUAAGUCGGAUUUGUUGUCAAAACCCUUUCUCUU
(((((((........)))))))....(((((((...((((.(((((.((....)).))))).........((((....)))))))).)))))))............... ( -33.50)
>consensus
UUGGGCCAACUGAGAGGCCCAACCGAGACGGCACUUAUCCACCUGAACGGUUUCGAUUAGGGUGAUUCACGAUUUUUAAAUCGGAUUUGUUGUCAAAACCCUUUCUCUU
(((((((........)))))))....(((((((...((((.(((((.((....)).))))).........((((....)))))))).)))))))............... (-30.29 = -30.73 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:49 2006