Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,614,428 – 10,614,534 |
Length | 106 |
Max. P | 0.650921 |
Location | 10,614,428 – 10,614,534 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 83.57 |
Mean single sequence MFE | -34.12 |
Consensus MFE | -26.87 |
Energy contribution | -26.77 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.21 |
Mean z-score | -1.73 |
Structure conservation index | 0.79 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650921 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10614428 106 + 22407834 GCGAAAGUC------------UGAAAUUGACUUUGGGUCAUCUGAAAGUCGGAAAAGGGCUUAGGUUCGAGGUUCAAGGCGUUCGUAAUGAAUUGUAAACGCAGACACGUGUGUCGCU (((((.(((------------((((.((((.((((((((.((((.....))))....)))))))).))))..))).)))).)))))..............((.((((....)))))). ( -30.80) >DroPse_CAF1 94532 94 + 1 GC-----AC------------UGGAAUUGACUUUGGGUCAGCUGAAAGUCAAUGUCGGGCUUGGGUCUGA-------GGCGUUCGUAAUGAAUUGUAAACGCAGACACGUGUGCCACU ((-----((------------((..(((((((((.((....)).)))))))))(((((((....))))..-------.(((((..(((....)))..))))).))).)).)))).... ( -31.30) >DroSec_CAF1 94019 106 + 1 GUGAAUGUC------------UGAAAUUGACUUUGGGUCAUCUGAAAGUCGGCAGAGGGCUUAAGUUCGAGGUUCAAGGCGUUCGUAAUGAAUUGUAAACGCAGACACGUGUGUCGCU ..(((((((------------((((.((((.((((((((.((((........)))).)))))))).))))..))).))))))))................((.((((....)))))). ( -33.40) >DroSim_CAF1 94439 106 + 1 GCGAAUGUC------------UGAAAUUGACUUUGGGUCAUCUGAAAGUCGAAAGAGGGCUUAAGUUCGAGGUUCAAGGCGUUCGUAAUGAAUUGUAAACGUAGACACGUGUGUCGCU (((((((((------------((((.((((.((((((((.(((..........))).)))))))).))))..))).)))))))))).................((((....))))... ( -32.30) >DroEre_CAF1 94707 118 + 1 GCGAAUGUCUGGCAGUCAGUCUGAAAUUGACUUUGGGUCAGCCGAAAGUCGGAAGAGGGCUUAGGUUCGAGGUUCAAGGCGUUCGUAAUGAAUUGUAAACGCAGACACGUGUGUCGCU ((((((.((..((....(((((....((((((((.((....)).))))))))....)))))...))..)).))))...(((((..(((....)))..))))).((((....)))))). ( -39.70) >DroYak_CAF1 97430 118 + 1 GCGAAUGUCUGGCAGUCAGUAUGAAAUUGACUUUGGGUCAGCCGACAGUCGGAAAAGGGCUUAGGUUCGAGGUUCAAGGCGUUCGUAAUGAAUUGUAAACGCAGACACGUGUGUCGCU ((((((.((..(((((((((.....)))))))(((((((..(((.....))).....)))))))))..)).))))...(((((..(((....)))..))))).((((....)))))). ( -37.20) >consensus GCGAAUGUC____________UGAAAUUGACUUUGGGUCAGCUGAAAGUCGGAAGAGGGCUUAGGUUCGAGGUUCAAGGCGUUCGUAAUGAAUUGUAAACGCAGACACGUGUGUCGCU ((((((.((.................((((((((.((....)).))))))))....((((....)))))).))))...(((((..(((....)))..))))).((((....)))))). (-26.87 = -26.77 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:48 2006