Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,613,238 – 10,613,329 |
Length | 91 |
Max. P | 0.525543 |
Location | 10,613,238 – 10,613,329 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 83.75 |
Mean single sequence MFE | -24.82 |
Consensus MFE | -17.05 |
Energy contribution | -17.17 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.16 |
Mean z-score | -1.89 |
Structure conservation index | 0.69 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525543 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10613238 91 - 22407834 --CUUGUUGUUGUGGUAGUCCUCUGUUAAACAUGUUUGACACGGACUCUCGUGGGAUAAGUCCCCCUAUUCCGUAACCCUCCUGCCGCAUCAU --.....((.((((((((......((((((....))))))(((((.....(.((((....)))))....))))).......)))))))).)). ( -27.20) >DroPse_CAF1 93388 89 - 1 UUGUUGCUGUUGCGGUAGUCCUCUGUUAAACAUGUUUGACACAGACUCCCAUGGGAUA--UCCCCCUCGCUCGGGUCCCUCCAU--ACAAUGU ((((.((....))((.((((...(((((((....)))))))..)))).))..((((..--.(((........))))))).....--))))... ( -22.20) >DroSec_CAF1 92860 91 - 1 --CUUGUUGUUGUGGUAGUCCUUUGUUAAACAUGUUUGACACGGACUCUCGUGGGAUAAGUCCCCCUAUUCCGUAACCCUCCUGCCGCAUCAU --.....((.((((((((......((((((....))))))(((((.....(.((((....)))))....))))).......)))))))).)). ( -27.20) >DroSim_CAF1 93231 91 - 1 --CUUGUUGUUGUGGUAGUCCUCUGUUAAACAUGUUUGACACGGACUCUCGUGGGAUAAGUCCCCCUAUUCCGUAACCCUCCUGCCGCAUCAN --.....((.((((((((......((((((....))))))(((((.....(.((((....)))))....))))).......)))))))).)). ( -26.60) >DroEre_CAF1 93557 92 - 1 CCCUUGUUGUUGUGGUAGUCCUCUGUUAAACAUGUUUGACACGGACUCUCGUGGGAUAAGUCCCCCUAUUCCGUAACCCU-CCGCCGCAUCAU .......((.(((((((((((..(((((((....))))))).))))).....((((((........))))))........-..)))))).)). ( -25.60) >DroPer_CAF1 95293 89 - 1 UUGUUGCUGUUGCGGUAGUCCUCUGUUAAACAUGUUUGACACAGACUCCCAUGGGAUA--UCCCCCUCGCUCGAGUCCCUCCAU--ACAAUGU ..(..(((...((((.((((...(((((((....)))))))..)))).))..(((...--.)))....))...)))..).....--....... ( -20.10) >consensus __CUUGUUGUUGUGGUAGUCCUCUGUUAAACAUGUUUGACACGGACUCUCGUGGGAUAAGUCCCCCUAUUCCGUAACCCUCCUGCCGCAUCAU ....((.(((.((((.(((((..(((((((....))))))).))))).))..((((....))))...................)).))).)). (-17.05 = -17.17 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:42 2006