Locus 3648

Sequence ID 2L_DroMel_CAF1
Location 10,611,580 – 10,611,685
Length 105
Max. P 0.965031
window5754

overview

Window 4

Location 10,611,580 – 10,611,685
Length 105
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 75.95
Mean single sequence MFE -21.24
Consensus MFE -6.40
Energy contribution -8.18
Covariance contribution 1.78
Combinations/Pair 1.05
Mean z-score -2.26
Structure conservation index 0.30
SVM decision value 1.58
SVM RNA-class probability 0.965031
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10611580 105 - 22407834
CACAGUGUAGCCACAAA----------CAUACACACACACACACUUACACUCGACAACAAAAGUGC-CGAACAACAACUG--GCAAAUUUGUGAAGUGGCUGUGA-AAAAAUUUCACAU
....(((((........----------..))))).((((..(((((..........(((((..(((-((.........))--)))..))))).)))))..)))).-............. ( -22.90)
>DroSec_CAF1 91157 105 - 1
CACAGUGUACCCACACA----------UACACACACACACACUCUUACACUCGACAACAAAAGUGC-CGAACAACAACUG--GCAAAUUUGUGAAGUGGCUGUGA-AAAAAUUUCACGU
....(((((........----------)))))...............((((.....(((((..(((-((.........))--)))..)))))..))))...((((-(.....))))).. ( -21.30)
>DroEre_CAF1 92001 105 - 1
CACAGUGUACCCGCACA----------CACACUCAUGCACACGCUUACACUCGACAACAAAAGUGC-CGAACAACAACUG--GCAAAUUUGUGAAGUGGCUGUGA-AAAAAUUUUACGU
((((((......(((..----------........))).........((((.....(((((..(((-((.........))--)))..)))))..)))))))))).-............. ( -22.30)
>DroYak_CAF1 94523 115 - 1
CACAGUGUACCCACACACACAUACACACACACUCGUGUACACUUGUACACUCGACAACAAAAGCGC-CGAACAACAACUG--GCAAAUUUGUGAAGUGGCUGUGA-AAAAAUUUCACGU
....((((......)))).....((((..(((((((((((....))))))......(((((...((-((.........))--))...)))))).))))..)))).-............. ( -26.40)
>DroAna_CAF1 93629 86 - 1
---------------------------UACAACAAGGCA------CACACUUGACAACAAAACCCCGCCAACAACAACUGCUGAAAAUUUGUCAAGUGGCUGGAAAAAAAAUUUCACGU
---------------------------........(((.------..((((((((((.........((...........)).......))))))))))))).((((.....)))).... ( -13.29)
>consensus
CACAGUGUACCCACACA__________CACACACACGCACACUCUUACACUCGACAACAAAAGUGC_CGAACAACAACUG__GCAAAUUUGUGAAGUGGCUGUGA_AAAAAUUUCACGU
((((((((....)).................................((((.....(((((..(((.....((.....))..)))..)))))..))))))))))............... ( -6.40 =  -8.18 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:41 2006