Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,610,604 – 10,610,707 |
Length | 103 |
Max. P | 0.500000 |
Location | 10,610,604 – 10,610,707 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 91.41 |
Mean single sequence MFE | -30.44 |
Consensus MFE | -23.88 |
Energy contribution | -24.88 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.40 |
Structure conservation index | 0.78 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10610604 103 - 22407834 GGAGUUGCAGUUGGGCAAAAAGAGGGCCAAAACAAACAGAAAAGUUGCUACCCAGACGGAAUUGAAGGCCUUAUGUUUCCCAUUGCGGUUGCGUGGGCAACAU .....((((((.(((.(((...((((((......(((......))).....((....)).......))))))...))))))))))))(((((....))))).. ( -30.10) >DroSec_CAF1 90202 103 - 1 GGAGUUGCAGUUGGGCAAAAAGAGGGCCAAAACAAACAUGAAAGUUGCAGCCCAGACGGAAUUGAAGGCCUUGUGUUUCCCAUUGCGGUUGCGUGGGCAACAU .....((((((.(((.(((.(.((((((......(((......))).....((....)).......)))))).).))))))))))))(((((....))))).. ( -30.00) >DroSim_CAF1 90748 103 - 1 GGAGUUGCAGUUGGGCAAAAAGAGGGCCAAAACAAACAUGAAAGUUGCAGCCCAGACGGAAUUGAAGGCCUUAUGUUUCCCAUUGCGGUUGCGUGGGCAACAU .....((((((.(((.(((...((((((......(((......))).....((....)).......))))))...))))))))))))(((((....))))).. ( -30.10) >DroEre_CAF1 91066 97 - 1 --AGUUGCAGUGGGGCAA-A--AGGGCCAAAACAAACAGAAAAGUUGCUGCCCAGACGGCAUUGAAGGCCUUAUGUUUC-CAUUGCGGUUGCGUGGGCAACAU --...((((((((((((.-.--((((((......(((......)))((((......))))......)))))).)).)))-)))))))(((((....))))).. ( -34.00) >DroYak_CAF1 93514 98 - 1 --AGUUGGAGUGGUGCAAAA--AGGGCCAAGACACACAGAAAAGUUGCAGCCCAGACGGCAUUGAAGGCCUUAUGUUUC-CAUUGCGGUUGCGUGGGCAACAU --...((.(((((.(((...--((((((..(((..........)))...(((.....)))......)))))).)))..)-)))).))(((((....))))).. ( -28.00) >consensus GGAGUUGCAGUUGGGCAAAAAGAGGGCCAAAACAAACAGAAAAGUUGCAGCCCAGACGGAAUUGAAGGCCUUAUGUUUCCCAUUGCGGUUGCGUGGGCAACAU .....((((((.(((.(((...((((((......(((......))).....((....)).......))))))...))))))))))))(((((....))))).. (-23.88 = -24.88 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:40 2006