Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,610,322 – 10,610,458 |
Length | 136 |
Max. P | 0.879187 |
Location | 10,610,322 – 10,610,422 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 93.75 |
Mean single sequence MFE | -24.76 |
Consensus MFE | -21.71 |
Energy contribution | -21.83 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.14 |
Mean z-score | -1.71 |
Structure conservation index | 0.88 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879187 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10610322 100 + 22407834 ACGUCUUCAUUCGUCGCUGAUUUAUGGCCUAUUAAAUUGCAUUUGACCCUGCGGCUAACGGCUGCCCAUUUGUCAGCUCGAAUUUCCAAAU-UCCCACGCA ........(((((..((((((..((((....((((((...))))))....(((((.....)))))))))..)))))).)))))........-......... ( -24.50) >DroSec_CAF1 89920 100 + 1 ACGUCUUCAUUCGUCGCUGAUUUAUGGCCUAUUAAAUUGCAUUUGGCCCUGCGGCUAACGGCUGCCCAUUUGUCAGCUCGAAUUUCCAAAU-UCCCACGCA ........(((((..((((((..((((((...............))))..(((((.....)))))..))..)))))).)))))........-......... ( -25.46) >DroSim_CAF1 90466 100 + 1 ACGUCUUCAUUCGUCGCUGAUUUAUGGCCUAUUAAAUUGCAUUUGGCCCUGCGGCUAACGGCUGCCCAUUUGUCAGCUCGAAUUUCCAAAU-UCCCACGCA ........(((((..((((((..((((((...............))))..(((((.....)))))..))..)))))).)))))........-......... ( -25.46) >DroEre_CAF1 90793 99 + 1 ACGUCUUCAUUCGUCGCUGAUUUAUGGCCUAUUAAAUUGCAUUUGGCCCU-CGGCUAACGGCUGCCCAUUUGUCAGCUCUAAUUUCCAAAU-UCCCACGCA (((........))).((((((..((((.(.........((..((((((..-.))))))..)).).))))..))))))..............-......... ( -20.60) >DroYak_CAF1 93228 101 + 1 ACGUCUUCAUUCGUCGCUGAUUUAUGGCCUAUUAAAUUGCAUUUGGCCCUGCGGCUAACGGCUGCCCAUUUGUCAGCUCGAAUUUCCAAAUUUCCCACGCA ........(((((..((((((..((((((...............))))..(((((.....)))))..))..)))))).))))).................. ( -25.46) >DroAna_CAF1 92399 99 + 1 ACGGCUUUAUUCAUCGCUGAUUUAUGGCCUAUUAAAUUGCAUUUGGCCCUGCAGCGCUCGGCUGC-CAUUUGUCAGCUUAGAUUGCCAGGU-UCCCACGAA ..(((.....((...((((((..((((((...............))))..(((((.....)))))-.))..))))))...))..)))....-......... ( -27.06) >consensus ACGUCUUCAUUCGUCGCUGAUUUAUGGCCUAUUAAAUUGCAUUUGGCCCUGCGGCUAACGGCUGCCCAUUUGUCAGCUCGAAUUUCCAAAU_UCCCACGCA ........(((((..((((((..((((((...............))))..(((((.....)))))..))..)))))).))))).................. (-21.71 = -21.83 + 0.11)
Location | 10,610,343 – 10,610,458 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.02 |
Mean single sequence MFE | -30.65 |
Consensus MFE | -18.68 |
Energy contribution | -17.47 |
Covariance contribution | -1.22 |
Combinations/Pair | 1.38 |
Mean z-score | -1.45 |
Structure conservation index | 0.61 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.581018 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10610343 115 + 22407834 UUAUGGCCUAUUAAAUUGCAUUUGACCCUGCGGCUAACGGCUGCCCAUUUGUCAGCUCGAAUUUCCAAAU-UCCCACGCAGCCAGCU----AACAACGUGGCCAAUUCAAUGUCACGUUA ...((((.........(((..(((((...(((((.....)))))......)))))...(((((....)))-))....)))))))...----...((((((((.........)))))))). ( -26.90) >DroPse_CAF1 91063 101 + 1 UUAUGGCCUAUUAAAUUGCAGUUGGCCCUGCGG--------UGUUCUGUGGCCGACUCGAGUUUCGAAAUUUCCCACGGCA-----------CAGACGUGGCCAAUUCAGUGUCACGUUA ...(((((............(((((((..((((--------....)))))))))))(((.....)))..........))).-----------))(((((((((......).)))))))). ( -32.70) >DroEre_CAF1 90814 111 + 1 UUAUGGCCUAUUAAAUUGCAUUUGGCCCU-CGGCUAACGGCUGCCCAUUUGUCAGCUCUAAUUUCCAAAU-UCCCACGCAGCC-------GCUCAACGUGGCCAAUUCAAUGUCACGUUA ...((((.......((((...((((((..-((.....(((((((..(((((..((......))..)))))-......))))))-------).....)).))))))..))))))))..... ( -27.01) >DroYak_CAF1 93249 120 + 1 UUAUGGCCUAUUAAAUUGCAUUUGGCCCUGCGGCUAACGGCUGCCCAUUUGUCAGCUCGAAUUUCCAAAUUUCCCACGCAGCCAGCCUUUGGCCAACGUGGCCAAUUCAAUGUCACGUUA ....((((.........(((........)))((((...((((((..(((((......)))))...............))))))))))...))))((((((((.........)))))))). ( -33.83) >DroAna_CAF1 92420 107 + 1 UUAUGGCCUAUUAAAUUGCAUUUGGCCCUGCAGCGCUCGGCUGC-CAUUUGUCAGCUUAGAUUGCCAGGU-UCCCACGAAC-----------GGAACGUGGCCAAUUCAGUGUCACGUUA ....((((...............))))..(((((.....)))))-.....((..(((..((((((((.((-(((.......-----------))))).))).))))).)))...)).... ( -30.76) >DroPer_CAF1 92981 101 + 1 UUAUGGCCUAUUAAAUUGCAGUUGGCCCUGCGG--------UGUUCUGUGGCCGACUCGAGUUUCGAAAUUUCCCACGGCA-----------CAGACGUGGCCAAUUCAGUGUCACGUUA ...(((((............(((((((..((((--------....)))))))))))(((.....)))..........))).-----------))(((((((((......).)))))))). ( -32.70) >consensus UUAUGGCCUAUUAAAUUGCAUUUGGCCCUGCGGCUAACGGCUGCCCAUUUGUCAGCUCGAAUUUCCAAAU_UCCCACGCAG___________CCAACGUGGCCAAUUCAAUGUCACGUUA ...(((...((((((((....(((((...(((((.....)))))......)))))....)))))...)))...)))..................((((((((.........)))))))). (-18.68 = -17.47 + -1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:39 2006