| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,606,487 – 10,606,581 |
| Length | 94 |
| Max. P | 0.527170 |
| Location | 10,606,487 – 10,606,581 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 79.20 |
| Mean single sequence MFE | -23.40 |
| Consensus MFE | -17.12 |
| Energy contribution | -17.48 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.73 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527170 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10606487 94 - 22407834 A----------CAUACACAUACGUAAAGCUUUUAGUUUAAGCCCCACAAAGGCUUUUAGCAAUUUAACGCACAGCUUAACAGCUGGCCAA-----AAACGGAAGGGUAG---- .----------..(((.....(((..........(((.(((((.......)))))..)))........((.(((((....)))))))...-----..))).....))).---- ( -19.60) >DroSec_CAF1 86110 104 - 1 ACACACUCACACAUACACAUAGGGGAAGCUUUUAGGUUAAGCCCCGCAAAGGCUUUUAGCAAUUUAACGCACAGCUUAACAGCUGGCCAA-----AAGCGGCAGGGUAG---- ....((((.............((((.((((....))))...))))((....((((((.((........)).(((((....)))))...))-----)))).)).))))..---- ( -27.80) >DroSim_CAF1 86666 104 - 1 ACACACACACACAUACACAUAGGGGAAGCUUUUAGUUUAAGCCCCGCAAAGGCUUUUAGCAAUUUAACGCACAGCUUAACAGCUGGCCAU-----CAACGGAAGGGUAG---- .............(((.....((((((((.....))))...)))).....(((.....((........)).(((((....))))))))..-----...(....).))).---- ( -22.80) >DroEre_CAF1 87126 86 - 1 ---------------------CGGGAAGCUCUUAGUUUAAGCCCUGCAAAGGCUUUUAGCAAUUUAACGCACAGCUUAACAGCUGGCCA------AAACGGAAGGGUAGCUGG ---------------------(.((..((((((.(((((((((.......))))).............((.(((((....)))))))..------))))..))))))..)).) ( -23.00) >DroYak_CAF1 89319 95 - 1 AC--------------ACAUACGGGAAGCUUUUAGUUUAAGCCCCGCAAAGGCUUUUAGCAAUUUAACGCACAGCUUAACAGCUGGCCAACAGCAAAACGAAAGGGUAG---- ..--------------...((((((..((((.......)))))))((...(((.....((........)).(((((....))))))))....))....(....).))).---- ( -22.50) >DroAna_CAF1 88509 85 - 1 -------------------CCCGGGAAGCUUUUAGUUUAAGCCCCGAAAAGGCUUUUAGCAAUUUAACGCACAGCUUAACAGCUGGCCAA-----CCGAGGCAGGGGAG---- -------------------((((((..((((.......))))))).....(((.....((........)).(((((....))))))))..-----........)))...---- ( -24.70) >consensus A_______________ACAUACGGGAAGCUUUUAGUUUAAGCCCCGCAAAGGCUUUUAGCAAUUUAACGCACAGCUUAACAGCUGGCCAA_____AAACGGAAGGGUAG____ ......................(((..((((.......))))))).....(((.....((........)).(((((....))))))))......................... (-17.12 = -17.48 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:37 2006