Locus 3644

Sequence ID 2L_DroMel_CAF1
Location 10,606,309 – 10,606,417
Length 108
Max. P 0.779303
window5749

overview

Window 9

Location 10,606,309 – 10,606,417
Length 108
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 89.34
Mean single sequence MFE -22.97
Consensus MFE -15.98
Energy contribution -16.78
Covariance contribution 0.80
Combinations/Pair 1.09
Mean z-score -2.50
Structure conservation index 0.70
SVM decision value 0.55
SVM RNA-class probability 0.779303
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10606309 108 + 22407834
UGUCUGGGACUCCCGGCUGAUUCCCCCUUGUACAUUUUGGUCCACAACAUCCACCUGCAGUGUCAAUAUUUACACACACUCAGGAC--ACAACAACAACAACAGACCAAA
.((((((((((....((............)).......)))))..........((((.(((((............)))))))))..--.............))))).... ( -21.60)
>DroSec_CAF1 85938 102 + 1
UGUCUGGGACUCCGGACUGAUUCCCCCUUGGACAUUUUGGGCCACAACACCCACCUGCAGUGUCAAUAUUUACACACACUCAGGAC--ACAAC------AACAGACCAAA
.((((((....))))))..........((((......((((........))))((((.(((((............)))))))))..--.....------......)))). ( -26.00)
>DroSim_CAF1 86495 102 + 1
UGUCUGGGAUUCCGGACUGAUUCCCCCUUGGACAUUUUGGCCCAAAACACCCACCUGCAGUGUCAAUAUUUACACACACUCAGGAC--ACAAC------AACAGACCAAA
.(((((((...(((((.((..(((.....))))).))))).))..........((((.(((((............)))))))))..--.....------..))))).... ( -23.30)
>DroEre_CAF1 86934 99 + 1
UGUCUG-GAUGCCGGACUGAUUCCCC-U-GGACAUUUUAGCCCACAACACCCACCUGCAGUGCCAAUAUUUACACACACUCAGGAC--ACAAC------AACAAGCCAAA
.((..(-((((((((..........)-)-)).)))))..))............((((.((((..............))))))))..--.....------........... ( -16.54)
>DroYak_CAF1 89128 103 + 1
UGUCUGGGAUUCCGGGCUGAUUCCCC-UCGGACAUUUUAGCCCACAACACCCACCUGCAGUGUCAAUAUUUACACACACUCAGGACUCACAAC------AACCAACCAAA
((..(((......(((((((.(((..-..)))....)))))))..........((((.(((((............))))))))).........------..)))..)).. ( -27.40)
>consensus
UGUCUGGGAUUCCGGACUGAUUCCCCCUUGGACAUUUUGGCCCACAACACCCACCUGCAGUGUCAAUAUUUACACACACUCAGGAC__ACAAC______AACAGACCAAA
.(((((.......((.((((.(((.....)))....)))).))..........((((.(((((............))))))))).................))))).... (-15.98 = -16.78 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:36 2006