Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,605,032 – 10,605,162 |
Length | 130 |
Max. P | 0.983031 |
Location | 10,605,032 – 10,605,142 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 95.06 |
Mean single sequence MFE | -37.24 |
Consensus MFE | -32.62 |
Energy contribution | -33.10 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.07 |
Mean z-score | -1.86 |
Structure conservation index | 0.88 |
SVM decision value | 1.93 |
SVM RNA-class probability | 0.983031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10605032 110 + 22407834 UCUCUUGAUUACGCGACGUCUUGCGAGAAGAAGUUGAGAAAAGAAAAACGCAGCGCAUCCAAAUUGGCUUUGCCACUGCCGAUUGAGCGGAUGGGUUGCCUCUUCAGUCG ......((((.(((((....))))).(((((.(((...........)))(((((.(((((.(((((((.........)))))))....))))).))))).))))))))). ( -36.40) >DroSec_CAF1 84690 109 + 1 UCUCUUGAUUACGCGACGUCUCGCGAGAAGAAGUUGA-AAAAGAAGAACGCAGCGCAUCCAAAUUGGCUUUGCCACUGCCGAUUGAGCAGAUGGGUUGCCUCUUCAGUCG ......((((...((((.((((....).))).)))).-....(((((..(((((.((((..(((((((.........))))))).....)))).))))).))))))))). ( -35.60) >DroSim_CAF1 85261 109 + 1 UCUCUUGAUUACGCGACGUCUCGCGAGAAGAAGUUGA-AAAAGAAGAACGCAGCGCAUCCAAAUUGGCUUUGCCACUGCCGAUUGAGCAGAUGGGUUGCCUCUUCACUCG ((.(((..((.(((((....))))).))..)))..))-....(((((..(((((.((((..(((((((.........))))))).....)))).))))).)))))..... ( -34.10) >DroEre_CAF1 85645 109 + 1 UCUCUUGAUUACGCGACGUCUCGCGCGAAGAACUUGA-AAAAGAAGAACGCAGCGCAUCCAAAUCGGCUUUGCCACUGCCGAUUGAACGGAUGGGUUGCCCCUUCAGCCG ...........(((((....))))).((((..(((..-..)))......(((((.(((((.(((((((.........)))))))....))))).)))))..))))..... ( -38.70) >DroYak_CAF1 87836 109 + 1 UCUCUUGAUUACGCGACGUCUCGCGAGAAGAAGUUGC-AAAAGAAGAACGCAGCGCAUCCAAAUUGGCUUUGCCACUGCCGAUUGAACGGAUGGGUUGCCUCUUCAGCCG ............(((((.((((....).))).)))))-....(((((..(((((.(((((.(((((((.........)))))))....))))).))))).)))))..... ( -41.40) >consensus UCUCUUGAUUACGCGACGUCUCGCGAGAAGAAGUUGA_AAAAGAAGAACGCAGCGCAUCCAAAUUGGCUUUGCCACUGCCGAUUGAGCGGAUGGGUUGCCUCUUCAGUCG ...........(((((....))))).................(((((..(((((.(((((.(((((((.........)))))))....))))).))))).)))))..... (-32.62 = -33.10 + 0.48)
Location | 10,605,062 – 10,605,162 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 93.16 |
Mean single sequence MFE | -30.04 |
Consensus MFE | -26.22 |
Energy contribution | -26.86 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.05 |
Mean z-score | -1.39 |
Structure conservation index | 0.87 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811133 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10605062 100 + 22407834 AAGUUGAGAAAAGAAAAACGCAGCGCAUCCAAAUUGGCUUUGCCACUGCCGAUUGAGCGGAUGGGUUGCCUCUUCAGUCGGUCCUCUUGCACUUUAGUAU ..((.(((.(..((.....(((((.(((((.(((((((.........)))))))....))))).)))))........))..).)))..)).......... ( -27.82) >DroSec_CAF1 84720 99 + 1 AAGUUGA-AAAAGAAGAACGCAGCGCAUCCAAAUUGGCUUUGCCACUGCCGAUUGAGCAGAUGGGUUGCCUCUUCAGUCGGUCGUCUUGCACUUCAGUAU ...((((-(...(((((..(((((.((((..(((((((.........))))))).....)))).))))).))))).((.((....)).))..)))))... ( -29.10) >DroSim_CAF1 85291 99 + 1 AAGUUGA-AAAAGAAGAACGCAGCGCAUCCAAAUUGGCUUUGCCACUGCCGAUUGAGCAGAUGGGUUGCCUCUUCACUCGGUCGUCUUGCACUUCAGUAU (((.(((-....(((((..(((((.((((..(((((((.........))))))).....)))).))))).)))))......))).)))............ ( -27.20) >DroEre_CAF1 85675 99 + 1 AACUUGA-AAAAGAAGAACGCAGCGCAUCCAAAUCGGCUUUGCCACUGCCGAUUGAACGGAUGGGUUGCCCCUUCAGCCGCUCGUCUUGCACUUCAGUUU ((((.((-(...((((...(((((.(((((.(((((((.........)))))))....))))).)))))..))))....((.......))..))))))). ( -34.10) >DroYak_CAF1 87866 99 + 1 AAGUUGC-AAAAGAAGAACGCAGCGCAUCCAAAUUGGCUUUGCCACUGCCGAUUGAACGGAUGGGUUGCCUCUUCAGCCGCUCGUCUCGCACUUCAGUAU ....(((-....(((((..(((((.(((((.(((((((.........)))))))....))))).))))).)))))....((.......))......))). ( -32.00) >consensus AAGUUGA_AAAAGAAGAACGCAGCGCAUCCAAAUUGGCUUUGCCACUGCCGAUUGAGCGGAUGGGUUGCCUCUUCAGUCGGUCGUCUUGCACUUCAGUAU ............(((((..(((((.(((((.(((((((.........)))))))....))))).))))).)))))......................... (-26.22 = -26.86 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:32 2006