Locus 3638

Sequence ID 2L_DroMel_CAF1
Location 10,591,195 – 10,591,301
Length 106
Max. P 0.914716
window5735

overview

Window 5

Location 10,591,195 – 10,591,301
Length 106
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 78.48
Mean single sequence MFE -22.56
Consensus MFE -14.45
Energy contribution -14.70
Covariance contribution 0.25
Combinations/Pair 1.14
Mean z-score -2.01
Structure conservation index 0.64
SVM decision value 1.10
SVM RNA-class probability 0.914716
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10591195 106 - 22407834
---GCAAUCAGCCUAUAAAUCAUGUCCUGCCACAAGGACAGCA-AAUGAAUAAAUGAUAAGCGGGCAAAAGCAGGCAGCGAAAAGUGGGCGAACAGAGCAAAACUUUAGA--------
---((.....((((((...((.((((((......))))))((.-.((......)).....((..((....))..)).))))...)))))).......))...........-------- ( -23.60)
>DroSec_CAF1 78552 96 - 1
---GCAAUCAGCCUAUAAAUCAUGUCCUGCCACAAGGACAGCA-AAUGAAUAAAUGAUAAGCGGGCAA----------CGAAAAGUGGGCGAACAAAGCAAAACUUUUGC--------
---((.....((((........((((((......))))))((.-................))))))..----------..((((((..((.......))...))))))))-------- ( -22.03)
>DroSim_CAF1 79092 96 - 1
---GCAAUCAGCCUAUAAAUCAUGUCCUGCCACAAGGACAGCA-AAUGAAUAAAUGAUAAGCGGGCAA----------CGAAAAGUGGGCGAACAAAGCAAAACUUUGGC--------
---((.....((((((...((.((((((......))))))...-...................(....----------)))...))))))...(((((.....)))))))-------- ( -23.00)
>DroEre_CAF1 79516 106 - 1
---GCAAUCAGCCUAUAAAUCAUGUCCUGCCACAAGGACAGCA-AAUGAAUAAAUGAUAAGCGAGCAAAAGGAGGCAACUGAAAGUGGGCGAACAAAGCAGAACUUUGGC--------
---((.....((((((...((.((((((......))))))((.-................))))........((....))....))))))...(((((.....)))))))-------- ( -23.63)
>DroYak_CAF1 81527 96 - 1
---GCAAUCAGCCUAUAAAUCAUGUCCUGCCACAAGGACAGCA-AAUGAAUAAAUGAUAAGC----------AGGCAACGCCAAGUGGGCGAACAAAGCAAAACUUUGGC--------
---((.....((((........((((((......))))))((.-................))----------))))..((((.....))))..(((((.....)))))))-------- ( -24.93)
>DroAna_CAF1 81163 108 - 1
AGGACACUCAGCCGAUAAAUCAUGGUCUGGCACAAGAAGAGCAAAAUGAAUAAAUGAUAAGCAGACAA----------AAGGCAAUAUGCAAGCCAAACAAAAGUUCUUCAAAUAAAU
..........((((((........))).)))....(((((((............((.....)).....----------..(((.........)))........)))))))........ ( -18.20)
>consensus
___GCAAUCAGCCUAUAAAUCAUGUCCUGCCACAAGGACAGCA_AAUGAAUAAAUGAUAAGCGGGCAA__________CGAAAAGUGGGCGAACAAAGCAAAACUUUGGC________
..........((((((......((((((......))))))((..................))......................))))))............................ (-14.45 = -14.70 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:23 2006