Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,588,844 – 10,588,935 |
Length | 91 |
Max. P | 0.580527 |
Location | 10,588,844 – 10,588,935 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 89.23 |
Mean single sequence MFE | -26.94 |
Consensus MFE | -23.30 |
Energy contribution | -23.34 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.32 |
Structure conservation index | 0.86 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580527 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10588844 91 + 22407834 CCCAAUGACCAUGGUUUCCAUAGUGGGUUGGGUCCAUCCAGCGAUGUGGAACGAUUCCAAAUCGAUGCAUCGCAGACUGAUUUCAUUCAGC ((((((.((.((((...)))).)).).)))))........((((((((...((((.....)))).))))))))...((((......)))). ( -27.10) >DroSec_CAF1 76238 91 + 1 CCCAAUGUCCAUGGUUUCCACAGUGGGUUGGGUCCAUCCAGCGAUGUGGAACGAUUCCAAAUCGAUGCAUCGCAGAGUGAUUUCAUUCAGC ((((((..((((.((....)).))))))))))........((((((((...((((.....)))).)))))))).(((((....)))))... ( -29.40) >DroSim_CAF1 76776 91 + 1 CCCAAUGUCCAUGGUUUCCAUAGUGGGUUGGGUCCAUCCAGCGAUGUGGAACGAUUCCAAAUCGAUGCAUCGCAGACUGAUUUCAUUCAGC ((((((.(.(((((...)))).).).))))))........((((((((...((((.....)))).))))))))...((((......)))). ( -27.00) >DroEre_CAF1 77246 86 + 1 CCCAAUGUUCAU-----UCACAGUGGGUUGGGUGCGGCUAGCGAUGUGGAACGAUUUUAAAUCGGUGCAUCGCAGACUGAUUUCAUUCAUC ((((.(((....-----..))).)))).(((((((((((.((((((((...((((.....)))).)))))))))).)))....)))))).. ( -26.30) >DroYak_CAF1 79188 91 + 1 CCCAAUGUCCAUGCUUUUCACACUGGGUUGGGUUCGGCCAGCGAUGUGGAACGAUUCCAAAUCGGUGCAUCGCAGACUGAUUUCAUUCAUA ((((((..(((((.......)).))))))))).((((.(.((((((((...((((.....)))).)))))))).).))))........... ( -24.90) >consensus CCCAAUGUCCAUGGUUUCCACAGUGGGUUGGGUCCAUCCAGCGAUGUGGAACGAUUCCAAAUCGAUGCAUCGCAGACUGAUUUCAUUCAGC ((((((..((((..........))))))))))........((((((((...((((.....)))).)))))))).((.((....)).))... (-23.30 = -23.34 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:21 2006