Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,586,267 – 10,586,378 |
Length | 111 |
Max. P | 0.972363 |
Location | 10,586,267 – 10,586,378 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 88.27 |
Mean single sequence MFE | -38.86 |
Consensus MFE | -33.22 |
Energy contribution | -33.66 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.15 |
Mean z-score | -2.01 |
Structure conservation index | 0.85 |
SVM decision value | 1.69 |
SVM RNA-class probability | 0.972363 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10586267 111 + 22407834 CUAUUCACCAUUCACAGCAUUCACAACUCACUGAGGUUGAAACGCGAGGCUGAGACUGCCAGGAUGAGCUGCAUCCGAGUGUUUUGGCCUCGAGUGAGCAAGUCGAGGCUU ...............(((.(((((..(((((((((((..((((((..(((.......))).(((((.....)))))..))))))..))))).))))))...)).)))))). ( -43.70) >DroSec_CAF1 73756 104 + 1 CUAUU-------CACAGCAUUCACAACUCACUGAGCUUGAAACGUGAGGCUGAGACGGCCAGGAUGAGCUGCAACCGAGUGUUUUGGCCUCGAGUGAGCAAGUCGAGGCUU .....-------((.(((((((........((.(((((........))))).)).(((((.....).)))).....))))))).))(((((((.(.....).))))))).. ( -33.10) >DroSim_CAF1 74250 111 + 1 CUAUUCACCAUUCACAGCAUUCACAACUCACUGAGGUUGAAACGUGAGGCUGAGACGGCCAGGAUGAGCUGCAUCCGAGUGUUUUGGCCUCGAGUGAGCAAGUCGAGGCUU ...............(((.(((((..(((((((((((..(((((...(((((...))))).(((((.....)))))...)))))..))))).))))))...)).)))))). ( -41.30) >DroEre_CAF1 74672 109 + 1 CCAUUCAGCAUU--CGGCAUUCACAACUCACUGAGGCUGAAACGUGAGGAUGGGACUGCCAGGAUGAGCUGCAUCCGAGUGUUUUGGCCUCGAGUGAGCAACUGGAAGCUG ............--((((.((((...(((((((((((..((((((..(((((.(...(((.....).))).)))))..))))))..))))).))))))....)))).)))) ( -40.70) >DroYak_CAF1 76614 109 + 1 GCAUUCACCAUU--CAGCAUUCAGAACUCACUGAGGUUGAAACGUGAGGAUGCGACUGCCAGGAUGAGCUGCAUCCAAGUGUUUUGGCCUCGAGUUAGCAACUCAAAGCUG ............--((((..............(((((..((((((..(((((((...(((.....).)))))))))..))))))..)))))((((.....))))...)))) ( -35.50) >consensus CUAUUCACCAUUCACAGCAUUCACAACUCACUGAGGUUGAAACGUGAGGCUGAGACUGCCAGGAUGAGCUGCAUCCGAGUGUUUUGGCCUCGAGUGAGCAAGUCGAGGCUU ...............(((.(((((..(((((((((((..((((((..(((.......))).(((((.....)))))..))))))..))))).))))))...)).)))))). (-33.22 = -33.66 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:21 2006