Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 10,584,381 – 10,584,471 |
Length | 90 |
Max. P | 0.525289 |
Location | 10,584,381 – 10,584,471 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 88.09 |
Mean single sequence MFE | -29.83 |
Consensus MFE | -21.00 |
Energy contribution | -21.36 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.04 |
Mean z-score | -1.72 |
Structure conservation index | 0.70 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525289 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10584381 90 + 22407834 CUGGGACACUUGGAAAGGCGAAAGCCCACUUGGUUGAGUGGCUUUGGGAAAACCUAGGAGGACAGUUGUCACCCGCUCAGCCACUAGCUU ((((............(((....)))....((((((((((((((((((....)))).)))(((....)))..)))))))))))))))... ( -34.80) >DroSec_CAF1 71842 90 + 1 CUGGGACACUUGGAAAGCCGAAAGCCCACUUGGUUGAGUGGCUUCGGGAAAACCUAGGAGGACAGUUGUCACCCGCUCAGCCACUAGCUU .((((.(..((((....))))..)))))..((((((((((((((((((....))).))))(((....)))..)))))))))))....... ( -34.20) >DroSim_CAF1 72361 90 + 1 CUGGGACACUUGGAAAGCCGAAAGCCCACUUGGUUGAGUGGCUUCGGGAAAACCUAGGAGGACAGUUGUCACCCGCUCAGCCACUAGCUU .((((.(..((((....))))..)))))..((((((((((((((((((....))).))))(((....)))..)))))))))))....... ( -34.20) >DroEre_CAF1 72802 79 + 1 CUGGGAGACAUGGAA-------AGCCCACUUGGUUGAGUGGCUUCAGAAAAACGUAG---GACAGUUGUCAC-CGCUCAGCCACUAGCUU ((((......(((..-------...)))..(((((((((((((.(........).))---(((....))).)-))))))))))))))... ( -24.10) >DroYak_CAF1 74700 80 + 1 CUGGGACCCUUGGAA-------AGCCCACUUGGUUGAGUGGCUUCAGAAAAACCUAG---GACAGUUGUCACCCGCUGAGCCACUAGUUU ....((((..(((..-------...)))...)))).(((((((.(((..........---(((....))).....))))))))))..... ( -21.86) >consensus CUGGGACACUUGGAAAG_CGAAAGCCCACUUGGUUGAGUGGCUUCGGGAAAACCUAGGAGGACAGUUGUCACCCGCUCAGCCACUAGCUU ((((......(((............)))..(((((((((((....((......)).....(((....)))..)))))))))))))))... (-21.00 = -21.36 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:18 2006